Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51630 556 / 0 O-fucosyltransferase family protein (.1) AT3G21190 548 / 0 O-fucosyltransferase family protein (.1) AT4G38390 101 / 5e-23 RHS17 root hair specific 17 (.1) AT4G16650 100 / 1e-22 O-fucosyltransferase family protein (.1) AT5G65470 99 / 4e-22 O-fucosyltransferase family protein (.1) AT1G76270 99 / 6e-22 O-fucosyltransferase family protein (.1) AT1G20550 96 / 3e-21 O-fucosyltransferase family protein (.1) AT4G24530 96 / 5e-21 O-fucosyltransferase family protein (.1) AT1G35510 94 / 1e-20 O-fucosyltransferase family protein (.1) AT1G38065 93 / 2e-20 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035749 [exp] 842 / 0 AT1G51630 555 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 116 / 4e-28 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 115 / 2e-27 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 114 / 2e-27 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 111 / 4e-26 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 108 / 4e-25 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 107 / 4e-25 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 107 / 1e-24 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 105 / 2e-24 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250600 [exp] 635 / 0 AT1G51630 588 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G008300 [exp] 628 / 0 AT1G51630 599 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 116 / 6e-28 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 115 / 1e-27 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 106 / 1e-24 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 103 / 9e-24 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 101 / 6e-23 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 100 / 2e-22 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 97 / 2e-21 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 96 / 3e-21 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037328 pacid=23152534 polypeptide=Lus10037328 locus=Lus10037328.g ID=Lus10037328.BGIv1.0 annot-version=v1.0 ATGGGAGTGGATTTGAGGCAAGTTGTTGCGGGCATACTCACTATCACCATGTTCGTCATGCTCGGCGATATGTTCAAGCGGGATTATGTCGACACTCCTC AAGAAAGGTTTCTCAGTGGTGGTGAAGGCAGAGATGTTGAATTTGACAGCGGGAGAGTCATGGAGAAATTCTCTATGAAGAGCAATGGACCTTGGATGGA AGAGAGCCAAGAGCTTAGAGCTTGTTGGACCAAGAAGTCCGAATATGATGAGATGGAGGATATTAAAGGGTTTGTTACATTCTCATTAACTAATGGACCG GAGTACCACGTCTCACAGATTAGTGATGCAGTGACGATAGCTAGATATCTTAAGGCAACTCTGGTAGTTCCTGACATTAGAGGAGACCGGCCAGGCGATG AAAGGAAGTTTGAGGAAATCTATGACGTAAGGAAATTCGTGAATAGTTTGGATGGGGTGGTTAAAGTGGCAAGAGAGCTTCCGGAATCTATATCCATTCG AGATTTTGAAGTTGTCAGGGTTCCCAATCGCGTTACGGAAGAGCACATTGCGGAAAATATCGAACCAGTTTTCAAAAGGAAGGGTAACATCAGAGTGGCA ACCTACTTCCCTGCGGTAAATATGAGAAAGACCATACAGAAGAGTGGCAGCAGCGATTCGCTAGCGTGTTTGGCCATGTTCGACACTTTGGAGTTGAAGC CCGAGGTTAACGAGGTGGTCGATGACATGGTTGCGAGGTTGAAAACTTTGAGTCGAAAGTCTGATGGCCGGTTCGTAGCAGTGGATTTAAGAGTTGACAT GTTGGAGAAGAAGGGTTGCCAAGGAGGTGGTAGCAGTGCAACAAAGAACTGTTACAACGGACACGAAATCGCCTTGTTCTTGAGGAAGATCGGATTCGGT CAGGAGACCGTGATCTATCTAACTCAGTCGAGGTGGGATGAGAGTCTTGAAGTATTGAAGGACATCTTCCCTAAAACTTACACAAAGGAAAGTGTGATGT CAGCAGAGAAGAAACCCAAGTTTTTGGAAGCAGAAGATTCGGAGCTCGAGAAGGTCATGGACTTCTACTTATGTACAAGGAGCGATGTCTTTGTACCGGC CATCTCCGGCCTGTTCTACGCCAACGTAGCCGGGAAGAGAATCGCTGCGGGGAAGACTCAAATACTAGTTCCAGCAGAGATCCCGGGGACATCGTTGGCA GTCACCAGCCATTTCTCTCCTTACATCTCAAAGAGGAACCACATGGCCTATACATGTTTTTGCTAG
AA sequence Show only first row Show all	>Lus10037328 pacid=23152534 polypeptide=Lus10037328 locus=Lus10037328.g ID=Lus10037328.BGIv1.0 annot-version=v1.0 MGVDLRQVVAGILTITMFVMLGDMFKRDYVDTPQERFLSGGEGRDVEFDSGRVMEKFSMKSNGPWMEESQELRACWTKKSEYDEMEDIKGFVTFSLTNGP EYHVSQISDAVTIARYLKATLVVPDIRGDRPGDERKFEEIYDVRKFVNSLDGVVKVARELPESISIRDFEVVRVPNRVTEEHIAENIEPVFKRKGNIRVA TYFPAVNMRKTIQKSGSSDSLACLAMFDTLELKPEVNEVVDDMVARLKTLSRKSDGRFVAVDLRVDMLEKKGCQGGGSSATKNCYNGHEIALFLRKIGFG QETVIYLTQSRWDESLEVLKDIFPKTYTKESVMSAEKKPKFLEAEDSELEKVMDFYLCTRSDVFVPAISGLFYANVAGKRIAAGKTQILVPAEIPGTSLA VTSHFSPYISKRNHMAYTCFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	0	1
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	2.4	0.9204
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	5.2	0.8536
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	6.5	0.8153
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	7.1	0.8381
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	11.0	0.7958
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	11.0	0.8591
AT5G39865			Glutaredoxin family protein (....		Lus10007256 [exp]	15.5	0.8271
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	18.5	0.8325
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	19.5	0.8457
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	20.3	0.8079

Compare expression of checked genes

Lus10037328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.