Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 595 / 0 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 474 / 1e-159 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G03540 159 / 1e-41 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 150 / 3e-38 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G50380 142 / 3e-35 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 134 / 5e-33 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G13990 131 / 1e-31 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT1G72470 128 / 7e-31 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 126 / 3e-30 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT2G28640 123 / 4e-29 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026230 [exp] 612 / 0 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 603 / 0 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10035750 [exp] 402 / 1e-136 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10007751 [exp] 158 / 2e-40 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 157 / 4e-40 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 155 / 7e-40 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 147 / 8e-37 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10018672 [exp] 144 / 6e-36 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1) Lus10014917 [exp] 144 / 1e-35 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250500 [exp] 736 / 0 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 704 / 0 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.006G272900 [exp] 615 / 0 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 611 / 0 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G017800 [exp] 154 / 2e-39 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 147 / 3e-37 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.014G015500 [exp] 148 / 4e-37 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.013G152900 [exp] 144 / 3e-36 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.016G071000 [exp] 144 / 3e-36 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 139 / 2e-34 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10037329 pacid=23152389 polypeptide=Lus10037329 locus=Lus10037329.g ID=Lus10037329.BGIv1.0 annot-version=v1.0 ATGGCTGAAATGGACATCTCCAGAAACCTTCTTTCTTCCAGGAGAGCTCTCTTGAAGGCAACCTTAGAGAATTCAAGAGCTATTGCTTCAGCATTGCATC AAACCGGCCAAAAACTGGATCGTATCGCCCAGAGCTTACCGCGTTTGGAAGCTGCAGCTAGGCCTTTCCCAGCTCAGAAATGCACATTCGCAGCAATCAC AGACCACGTCGATCGAGCAGTTGGCCCTGCAGCAGCTGTTCTGAAAGTCCACGGTACGATTCAGGAGCTTCAGAAGTCGGTCTCGGCAGATCCTAGTCCT AGTGATCTTTATGCTTATCTTTCTTCCCTGAAGAAGCTTGAGGAAGCACTTAAGTTTCTAGCCAACAACTGTGGACTAGCAATTCAGTGGCTGCAGGATA TTCTGCAGTTTCTGAAGGACAACTCAGTTGCCAAGGAGCCATACATTTGTAATGTCGAGAAGTCCTTGAGAATTTTGCTGGAGCTGGAAGCCACTGAGAA ACTTGCTCGAATCGATGGTGGTGTTCTGTTTGGCGCATTTAGGAAGCTAGGGATTGAATACAAACAGCTTCTTGTTGCAAACTCTGTTCCTGTCCCTTTG ACTATTTGTTCATTCACTGCTTTGAAAGCCATCCCTGTCGATGTCGTAGAAAAACTTCAGGCCATCACTGAGAGATTGAATGCTAACAACAGGTTACCAT GGTGTACATCAGCATATGTCGAGGTCCGGGTTGCAAATGCAAGGATAAGTTTAGAAGGGATTGATCTGAATTACCTTGATAAACCGATAATTGGGTGTGA TGATGTGGAAGAAGTAGAGGGCTGGATTGATCAATGGTCCAAGCACTTGGAGTTGATTGTAAAGAACATCTTTGAGGTTGAATTCAACCTTAGCAAAGAT GTCTTCTGCACTTCTCCGGATGAGGTCTCTATCGTTTGCTTTACAGAGATCGCCACCCGGTCTGGTATATTGTCATTCCTTCAGTTTGGAAGAAAAGTGA CAGAGTGCAAGAAGGATGCTATCAAGCTCTTGAGGCTACTCGACATCTTCACAGCTCTGGATAATCTCAGAGGCAATTTCAACAGACTTTTCGTAGGGAC ATCTTGCCTCGGCATTCGAAGCCAGACTAGGAGTCTCGTCAAGAGCATTGTTGATGGTGCTTGTGAGATCTTCTTGGGGCTTACAGATGATGTTTCGCGG CAAAGAGAAGTCTTTCCGGCTTCAAACGGCTGTGTTCCAAGGCTGGTAAGCTTTGTTACAGAGTATTGCAATGAATTACTAGGAGATAAATACAGGCCGT TATTGGAGAAAGTTCTGATGATTCACCAAAGCTGGAAACAAGAGAAGTACCAAGACGAACTTCTCACCAGGCAAATTTGCCATGTACTAAAAGAAATTGG GCTTAACCTGGATTCATGGTCAAAAGCACATGTGGATGCCCCGCTTTCTTACCTCTTCATGATGAATAACCACTGCCATTTCAGCAATCTCAGAGGCACA AAGCTTGGACATTTGATGGGAGATTCCTGGTTAAAGGCTCATGAACAATACAAAGACCATTTCATGGCTCTTTACTTGAGGGAAAGCTGGGGAAAGGTCA TCGGCCATCTTCGTCCACAGGGTCAAGCTTATTCATCTCCTGCAAAAGTATCTACAAAAGGGCTCAAAGCATTCAATCAGGCGCTTGATAACACGTACCA GAAGCAGTCGAGTTGGGTTGTCCCTGATGAGAGCTTGAGGTTGAGAATCTGCAAGCTCTTGGTTCAATCTCTAGTGCCTGTTTACAGAAGCTACTTACAG AACTATAAACTTCTAATTGAGCAAGATCCTAGTGCCAAAAAGCACGTCAAATACACAACACAAGGTCTCGAAACCATGCTGAGCTCTTTGTTCCAGCAGA AGATGACAAAATATAAACGCAACAGACTTGCATACTGGATTAGCAAGATCAAAGACGTAATGTCAGATCATTTCCAACCGACTCTGATGGCTGCCTGA
AA sequence Show only first row Show all	>Lus10037329 pacid=23152389 polypeptide=Lus10037329 locus=Lus10037329.g ID=Lus10037329.BGIv1.0 annot-version=v1.0 MAEMDISRNLLSSRRALLKATLENSRAIASALHQTGQKLDRIAQSLPRLEAAARPFPAQKCTFAAITDHVDRAVGPAAAVLKVHGTIQELQKSVSADPSP SDLYAYLSSLKKLEEALKFLANNCGLAIQWLQDILQFLKDNSVAKEPYICNVEKSLRILLELEATEKLARIDGGVLFGAFRKLGIEYKQLLVANSVPVPL TICSFTALKAIPVDVVEKLQAITERLNANNRLPWCTSAYVEVRVANARISLEGIDLNYLDKPIIGCDDVEEVEGWIDQWSKHLELIVKNIFEVEFNLSKD VFCTSPDEVSIVCFTEIATRSGILSFLQFGRKVTECKKDAIKLLRLLDIFTALDNLRGNFNRLFVGTSCLGIRSQTRSLVKSIVDGACEIFLGLTDDVSR QREVFPASNGCVPRLVSFVTEYCNELLGDKYRPLLEKVLMIHQSWKQEKYQDELLTRQICHVLKEIGLNLDSWSKAHVDAPLSYLFMMNNHCHFSNLRGT KLGHLMGDSWLKAHEQYKDHFMALYLRESWGKVIGHLRPQGQAYSSPAKVSTKGLKAFNQALDNTYQKQSSWVVPDESLRLRICKLLVQSLVPVYRSYLQ NYKLLIEQDPSAKKHVKYTTQGLETMLSSLFQQKMTKYKRNRLAYWISKIKDVMSDHFQPTLMAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10037329 [exp]	0	1
AT1G51640		ATEXO70G2	exocyst subunit exo70 family p...		Lus10035750 [exp]	4.5	0.8689
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	9.6	0.8501
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	15.8	0.8049
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	16.4	0.7530
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	17.0	0.7352
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	18.0	0.7109
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	20.1	0.7166
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	22.9	0.7570
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	28.4	0.7333
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	33.6	0.7728

Compare expression of checked genes

Lus10037329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.