Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21200 367 / 8e-128 PGR7 proton gradient regulation 7 (.1) AT3G03890 61 / 2e-10 FMN binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035751 [exp] 621 / 0 AT3G21200 362 / 6e-126 proton gradient regulation 7 (.1) Lus10010649 [exp] 49 / 2e-06 AT3G03890 409 / 9e-144 FMN binding (.1.2) Lus10013617 [exp] 42 / 0.0005 AT3G03890 363 / 6e-122 FMN binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250200 [exp] 408 / 9e-144 AT3G21200 419 / 3e-148 proton gradient regulation 7 (.1) Potri.008G008801 [exp] 132 / 6e-38 AT3G21200 145 / 3e-43 proton gradient regulation 7 (.1) Potri.013G057700 [exp] 52 / 2e-07 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.019G035200 [exp] 51 / 5e-07 AT3G03890 452 / 4e-161 FMN binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037330 pacid=23152588 polypeptide=Lus10037330 locus=Lus10037330.g ID=Lus10037330.BGIv1.0 annot-version=v1.0 ATGCTGCACCTCCAGAGCCAAGCTGGACTGAGCTCCAGCTCTCCTCATATCCCGCTTTACCCACTAATTTCTCCCCGTCGACCCATTCCACATTTCCAAC TCTCCTTCCCCAACCCACAACGACCCAAACTCTCCTTAAGATGCTCTGCCTCCGCCGTCGCTCTCGATGCTCCTCCGCTAAAACACAAGCCTTTCCCAGC CGAGGTCTCCCGAACCATCGTCGAATTGTCCTCCGTCGCCACTCTCTCTGCTATCACCGAACAAGGCTGGCCTCTCAGCATCGGCGTTCCTTTCGCGGTG GATGCTGAAGATGGGACTCCAATTCTCTGCCTCGCTGATTCCCATCGAATTGTCTCTCTCGGCGAGCGGTCCAGCCTCAATGTTCGGCTGGAGCAGAACG GAATTCGGACGGCTCAGTGCACGATTCAAGGTAGTCTAGTGAAGCCAGATGATTCAATGCGGTTAAAGAGTCTTACTTCCACGTGGAGAAAAAGATTTGG AGAAGTAGTTGAGGAAGACCTTTTATACATTGTTGATGTTGAAAAGGTACTTCAGATGGAAGACTTCATGGAGGATGGCATGTGGGTTTCTTCACTGGAA TACAAAAGCGCCCTTCCTGATCCTCTCCGGAACTCCGCAGAAGCACTCGTCAAAGAGATTAATGCCAATAATATGGAAGATGTCTCCAGATTTTGCAATG TATATGTTGATCTGGACTTCCAGGTTACTGAATCAAAGATGATATGGATTGATAGGCTAGGTTTTGATGTTCGTCTAACCTCTTCTCAGAAGGGCTCTTT TGATGTCAGAATACCATTCCCAAGAGAAGTGACGGATGAGAAAGGCGCAAAGTCATCCTTCAATGGCATGTCACAGTTGGCGTGGGAAGTGGAGAAAAAT TATCAAGCCCCAAATTTTGAGAAGGTGAAACAATTGAAGCAGATAGCTTGA
AA sequence Show only first row Show all	>Lus10037330 pacid=23152588 polypeptide=Lus10037330 locus=Lus10037330.g ID=Lus10037330.BGIv1.0 annot-version=v1.0 MLHLQSQAGLSSSSPHIPLYPLISPRRPIPHFQLSFPNPQRPKLSLRCSASAVALDAPPLKHKPFPAEVSRTIVELSSVATLSAITEQGWPLSIGVPFAV DAEDGTPILCLADSHRIVSLGERSSLNVRLEQNGIRTAQCTIQGSLVKPDDSMRLKSLTSTWRKRFGEVVEEDLLYIVDVEKVLQMEDFMEDGMWVSSLE YKSALPDPLRNSAEALVKEINANNMEDVSRFCNVYVDLDFQVTESKMIWIDRLGFDVRLTSSQKGSFDVRIPFPREVTDEKGAKSSFNGMSQLAWEVEKN YQAPNFEKVKQLKQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	3.0	0.8550
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	4.2	0.8754
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	4.4	0.8789
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10000244 [exp]	8.9	0.7959
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	8.9	0.8133
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10039570 [exp]	12.6	0.7818
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	12.6	0.8072
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	13.8	0.7741
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	16.1	0.8225
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	21.6	0.7935

Compare expression of checked genes

Lus10037330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.