Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73090 346 / 3e-119 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035752 [exp] 587 / 0 AT1G73090 374 / 2e-130 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250100 [exp] 333 / 3e-114 AT1G73090 329 / 4e-113 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037331 pacid=23152442 polypeptide=Lus10037331 locus=Lus10037331.g ID=Lus10037331.BGIv1.0 annot-version=v1.0 ATGAAAGCTTCTGCTGCCACTCTCACCAGTAGTCACCTTCAAACCCTCCATTTTCTTCCATCGCCCAACTTCTCCCTCTCTCCCCACGCGCAACCCTCCA CCGCGTTCTTCCCTACCACCACAGCCTCGAACAAGTCGAATTATACCAAGAAGCATGCTGGTTGTTCTTCTTATTTTTCTTCTTGCCGAGCTGCCGTTGG CCCCGCCAACGGAATTCAAAGGCTTTCCCAATCGCCGTGGGATGAGAAGCCCTACGAGATTCTGCCCAGTGGGAAGAAAGCTTACTTAGACGAGCAAGAC GTGGTTACGTTTCTCGACCCGCCCATCGGTTTGATTCCTCTTGACCCGGCTTCCTACAATCCTGCTGCCTACCTCTGGAAGAAAATCAACGATGTTCCTG AAGAGAGGCGCCATAGATTGATCAAACTATTGGAACCCAGGCTCATATCAAGAGCTTGGGAAATTGCCGGGACACGCTATCAGGATTCTAAGCTAGCTAA GCAGATTGCATCCAAGGTTTTGTCATGTGAAGATGGACAGAGATTACTTGAGTTCTATAATTGCCGATGCAGCGGAGGTCCTTTCCCAGTTTCCTGGATG AAATTCTTCAAGAAGGCTTTATTTCGTAGCAACGATGGGAAGATCTATGGGAGATTTATCGTTTCCAAAGCTGGAGGAGTCGTGGGTCAAATTGCTAACT CCATTAGCCCGCTCTACTTTTCGGCAACCGGAAGTAGAGAAGTGATGTCGACGGAGCAGCCTTGTGATTTAGCTTATGAATTCGGGGACGGCCACTTGAA GTTGGATAACTATCCGCTAGGGTTTCCCAAACCAGGAAAGCACCCATATCCATTCGACGACCACGTAGTGGTGTATGTTCGTCACATTGGACCAGGTGTA TCGGTCGGGCAAGCGTGGCAGGAAGGGAAGGAGTTGCATCAGGTGCCGAGGAAGCTGTGCAGCGAGATTCTGATGGTGAAAGACTACGGTGCATCATCGA CCGGTTGA
AA sequence Show only first row Show all	>Lus10037331 pacid=23152442 polypeptide=Lus10037331 locus=Lus10037331.g ID=Lus10037331.BGIv1.0 annot-version=v1.0 MKASAATLTSSHLQTLHFLPSPNFSLSPHAQPSTAFFPTTTASNKSNYTKKHAGCSSYFSSCRAAVGPANGIQRLSQSPWDEKPYEILPSGKKAYLDEQD VVTFLDPPIGLIPLDPASYNPAAYLWKKINDVPEERRHRLIKLLEPRLISRAWEIAGTRYQDSKLAKQIASKVLSCEDGQRLLEFYNCRCSGGPFPVSWM KFFKKALFRSNDGKIYGRFIVSKAGGVVGQIANSISPLYFSATGSREVMSTEQPCDLAYEFGDGHLKLDNYPLGFPKPGKHPYPFDDHVVVYVRHIGPGV SVGQAWQEGKELHQVPRKLCSEILMVKDYGASSTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73090			unknown protein		Lus10037331 [exp]	0	1
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	2.0	0.8637
AT1G36320			unknown protein		Lus10033109 [exp]	5.8	0.8237
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	7.5	0.8232
AT1G77122			Uncharacterised protein family...		Lus10028624 [exp]	7.9	0.7294
AT3G28760			unknown protein		Lus10005250 [exp]	9.0	0.8232
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	11.2	0.7890
AT3G25680			unknown protein		Lus10021714 [exp]	12.5	0.7923
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	13.0	0.8087
AT4G39740		HCC2	homologue of copper chaperone ...		Lus10016805 [exp]	13.9	0.7820
AT3G07530			unknown protein		Lus10011289 [exp]	15.3	0.7660

Compare expression of checked genes

Lus10037331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.