Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 1016 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 793 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT1G10180 360 / 7e-113 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035756 [exp] 1394 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10034843 [exp] 1277 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 758 / 0 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 751 / 0 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033648 [exp] 738 / 0 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10018297 [exp] 336 / 7e-104 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 335 / 1e-103 AT1G10180 854 / 0.0 unknown protein Lus10022896 [exp] 230 / 5e-64 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 177 / 1e-46 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249900 [exp] 1173 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 1131 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 820 / 0 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.012G120000 [exp] 359 / 2e-112 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 342 / 6e-106 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 300 / 7e-92 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 238 / 5e-67 AT1G10180 215 / 8e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10037332 pacid=23152437 polypeptide=Lus10037332 locus=Lus10037332.g ID=Lus10037332.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCGAAGACCGCTCGGTCCAGGGCGGCTCCGCTGAAGGAAAATGGGATGGCCAAGACGGAGGAAGGACTCAGCGTTTTCAAGTCCGATAAGT TCGATGCTGATGCTTATGTTCAGTCCAAATGCTCCCTCGATGACAAGGAAATAAGGCAACTCTGCTCGTATCTTTTGGATTTGAAGAAAGTGTCCGCTGA AGAAATGCGAAAAAGTGTGTACGCAAATTATCCTGCTTTTATACGTACATCGAAAGAGATATCGGATTTGGAAGGAGAGCTTTCATCTATTAGAACCCTA CTGTCCACTCAGGGTACTTTAATTCATAGTTTAGCTGAGGGGGTTGATATTGATCAATTGTCTGAAAGAGTTTCAGAAGAATCCTCTGAACATAGTTTGT TGGACAGTGAAGATAGAGAACCTTCTGACCTGGAGAAATGGTCTATTGAATTCCCTGATCTCCTTGACGTATTATTAGCTGAGAGGAGGGTGGATGAAGC TCTTGCAGCCTTTGAAGACGGGGAACAATTAGTTTCTGGAGCAAAAGAGGCAAAATCATTGAGTCCTGATGTACTAACATCGTTGGAGACTGCAATTATG CGACGGAAGCAAAAATTAGCTGATCAGCTTGCAGAAGCAACATGCCAACCCTCTACCCGAGGTACTGAACTCCGTGCAGCCGTAAGAGCTCTCAAAGGCC TTGGGGATGGCCCACGCGCTCATAGTTTGTTACTCAGTGCACATTTCCAACGGTACCAGTATAACATGCAAAGTCTCCGGCCATCAAACACTTCTTATGG AGGAGCATATACTGCCGCACTTTCCCAGATAGTTTTCTCGGCTATTGCTCAAGCTGCTACTGATTCTTTGTCAATCTTCGGTAAAGAGCCAGCATATACT TCTGAGCTTGTGATGTGGGCTACTAAGCAAACAGAGTCGTTTGCTGTTCTTATTAAAAGACACGCCTTAGCATCATCAGCAGCTGCAGGTGGATTACGAG CTGCTGCAGAGTGTGTACAGATAGCTTTGGGTCATTGCTCTCTGTTGGAATCCCGTGGCTTGGCAATTTGCCCTGTGCTCTTAAAACTCTTTAGACCTAG TGTTGAACAAGCAGTGGATGCTAATCTAAAACGTATTGAAGAGAGCACTGCTGCTATGGCTGCTGCTGATGATTGGGTACTTACTCACTCTCCGGTAGGC GCCCGGCAGTCGGGAAGGACTTCTGTCTCATCTCTTGGTAATGCAATTGCTTTCCAGCATAAACTCACCAGCAGTGCCCATCGCTTCAACCTAATGGTCC AGGACTTCTTTGAGGACGTTGCACCACTTCTAAGTATGCTGGGAGGTCAGACACTGGATGCTGTTTACCAAGTGTTCAACTCGTATATTAACATGCTTAT TAAGGCATTGCCAGGTTCGATGGAGGAAGAAGCAAATTTTGAAGGCTATGTTAATAAAATTGTCAGATTGGCTGAAACAGAAGAAGAGCAGATTGCATTA TTAGCAAATGCATCATTGTTAGCTGATGAACTACTGCCTCGTGCAGCAATGAAACTTTATCCTATGAATCATACTAATTATAAGGATGACAGAAGTAGGA GACATGCTGAGAAACCAAATCGTCATCCTGAGCAACGAGAATGGAGGAAGCGCCTTGTTTCTGCTGTTGATAGGTTGAAGGATACTTTCTGCCGACAGCA TGCGCTGGATCTCATTTTTACTGAAGATGGTGATAGTCATCTTACTGCTGAAATGTACATAAACATGGACAGTAACGTGGAGGATGTAGAATGGCTTCCT TCCCTTATATTCCAGGAACTTTATGTAAAACTGAGTAGGATGGCTTGTATAACCGCTGAGATGTTTGTTGGGAGGGAAAGATTCGCCACATTACTGCTGA TGAGACTTACAGAAACAGTCATCTTATGGCTGTCAGAAGATCAAAGCTTCTGGGACGACATAGAAGAAGGGCCTAGGGCACTAGGTCCTTTGGGCTTACA ACAGTTCTATCTTGATATGAAGTTTGTGTTGTGCTTCGCTGCCCAAGGTCGCTACCTATCACGAAATTTGCATCGGGTTGTGAACGAGATTATCCGGAAG GGCGTGGCAGCATTTGCGTCCACTGGAATGGATCCCGACAGGGTACTTCCGGAAGATGAATGGTTTATGGAGGTAAGCCAAGATACCATGGAAAGATTAA GCGGGAAACCGAAAGCCATAGATGGAGACAGGGAAGTGAACAGCCCAACAGCATCAGTGTCTGCACAGTCAATTTCGTCCGTAAGATCTCATGGGAGTAG CTGA
AA sequence Show only first row Show all	>Lus10037332 pacid=23152437 polypeptide=Lus10037332 locus=Lus10037332.g ID=Lus10037332.BGIv1.0 annot-version=v1.0 MSSAKTARSRAAPLKENGMAKTEEGLSVFKSDKFDADAYVQSKCSLDDKEIRQLCSYLLDLKKVSAEEMRKSVYANYPAFIRTSKEISDLEGELSSIRTL LSTQGTLIHSLAEGVDIDQLSERVSEESSEHSLLDSEDREPSDLEKWSIEFPDLLDVLLAERRVDEALAAFEDGEQLVSGAKEAKSLSPDVLTSLETAIM RRKQKLADQLAEATCQPSTRGTELRAAVRALKGLGDGPRAHSLLLSAHFQRYQYNMQSLRPSNTSYGGAYTAALSQIVFSAIAQAATDSLSIFGKEPAYT SELVMWATKQTESFAVLIKRHALASSAAAGGLRAAAECVQIALGHCSLLESRGLAICPVLLKLFRPSVEQAVDANLKRIEESTAAMAAADDWVLTHSPVG ARQSGRTSVSSLGNAIAFQHKLTSSAHRFNLMVQDFFEDVAPLLSMLGGQTLDAVYQVFNSYINMLIKALPGSMEEEANFEGYVNKIVRLAETEEEQIAL LANASLLADELLPRAAMKLYPMNHTNYKDDRSRRHAEKPNRHPEQREWRKRLVSAVDRLKDTFCRQHALDLIFTEDGDSHLTAEMYINMDSNVEDVEWLP SLIFQELYVKLSRMACITAEMFVGRERFATLLLMRLTETVILWLSEDQSFWDDIEEGPRALGPLGLQQFYLDMKFVLCFAAQGRYLSRNLHRVVNEIIRK GVAAFASTGMDPDRVLPEDEWFMEVSQDTMERLSGKPKAIDGDREVNSPTASVSAQSISSVRSHGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	0	1
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	2.4	0.8550
AT3G48860			unknown protein		Lus10043194 [exp]	6.5	0.8373
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	8.4	0.8497
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	8.5	0.8562
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	10.3	0.8811
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	12.2	0.8561
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	14.7	0.8484
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	17.5	0.8543
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	20.6	0.8534
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	21.7	0.8627

Compare expression of checked genes

Lus10037332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.