Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34200 264 / 4e-86 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 264 / 8e-86 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT3G19480 249 / 2e-80 D-3-phosphoglycerate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035758 [exp] 300 / 3e-100 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10019818 [exp] 261 / 6e-85 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 261 / 8e-85 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 260 / 1e-84 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009500 [exp] 275 / 6e-90 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 269 / 9e-88 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.009G096600 [exp] 263 / 7e-86 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 263 / 7e-86 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 254 / 2e-82 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 244 / 2e-78 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10037333 pacid=23152292 polypeptide=Lus10037333 locus=Lus10037333.g ID=Lus10037333.BGIv1.0 annot-version=v1.0 ATGATAACGAAAGGAATAATCGAGCCGATATCATCAGAGTACGTAAACCTGGTGAATGCGGATTTCGTAGCAAAGCAGAGGGGGTTGAGGATAAGTGAAG AGAGAGTGGTGGTGGAAGGGTCGCCTGAGATGCCAGTGCAGTCAATAGAGGTTCAGATATCGAACGTGGATTCGAAATTCGCGAGCGCAGTGGTGGCAGC GGAGGGAGGGGAGATAGCGATAGAAGGCAGAGTGAAATACGGAGTGCCGCATCTGACGAAGGTGGGAGGGTTCGAGGTGGACGTGAGCTTGGAAGGGAAT CTGATACTGTGTAGGCAGGTGGATCAACCAGGGATGATTGGGGTGGTTGGGAATATACTTGGAGATGATAATGTGAACGTGAGCTTCATGAGTGTAGGGA GGATGGCAAGGAAGAAGCAGGCGATAATGGCGATCGGAGTCGATGAAGAGCCGAGAGATGAGACTTTGTGTAAGATTGGTCAAGTTTCTGCTGTTGAAGA GTTCGTCTTCCTCAAGTTGTAG
AA sequence Show only first row Show all	>Lus10037333 pacid=23152292 polypeptide=Lus10037333 locus=Lus10037333.g ID=Lus10037333.BGIv1.0 annot-version=v1.0 MITKGIIEPISSEYVNLVNADFVAKQRGLRISEERVVVEGSPEMPVQSIEVQISNVDSKFASAVVAAEGGEIAIEGRVKYGVPHLTKVGGFEVDVSLEGN LILCRQVDQPGMIGVVGNILGDDNVNVSFMSVGRMARKKQAIMAIGVDEEPRDETLCKIGQVSAVEEFVFLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	0	1
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037334 [exp]	1.0	0.9517
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10035758 [exp]	1.4	0.8937
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	9.7	0.8222
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	13.0	0.8241
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	15.3	0.8280
					Lus10018015 [exp]	16.2	0.8055
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	18.2	0.8028
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	19.1	0.7937
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	20.3	0.8163
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	22.5	0.7766

Compare expression of checked genes

Lus10037333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.