Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17745 244 / 8e-77 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 243 / 2e-76 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 230 / 1e-71 D-3-phosphoglycerate dehydrogenase (.1) AT5G14780 69 / 5e-13 FDH formate dehydrogenase (.1) AT1G68010 67 / 2e-12 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT2G45630 63 / 3e-11 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 60 / 3e-10 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 58 / 1e-09 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 56 / 1e-08 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035758 [exp] 250 / 3e-79 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10027868 [exp] 249 / 5e-79 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 247 / 4e-78 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 246 / 1e-77 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014115 [exp] 66 / 4e-12 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014535 [exp] 66 / 5e-12 AT5G14780 607 / 0.0 formate dehydrogenase (.1) Lus10032150 [exp] 65 / 9e-12 AT5G14780 618 / 0.0 formate dehydrogenase (.1) Lus10019793 [exp] 65 / 1e-11 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 58 / 1e-09 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009500 [exp] 254 / 2e-80 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 250 / 6e-79 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.001G300900 [exp] 248 / 1e-78 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 246 / 6e-78 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 243 / 1e-76 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 229 / 2e-71 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.004G175800 [exp] 69 / 3e-13 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G161300 [exp] 64 / 1e-11 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.014G073500 [exp] 63 / 3e-11 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 61 / 2e-10 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10037334 pacid=23152540 polypeptide=Lus10037334 locus=Lus10037334.g ID=Lus10037334.BGIv1.0 annot-version=v1.0 ATGGCGCGGAATGTTGCACAGGCTGACGCTTCCGTCAAATCCGGTAATCAGCTTTTCCTCGTGCCTTCAAAACGGAAAATGGCAACGGACCAAGTACGTC GGCGTATCTATGGTGGGCAAAACACTAGCCGTGATGGGATTCGGCAAATGAGATGCGGCGAAGTCGGGTCGGAAGTCGCCCGGAGGGCAAAAGGTCTGGG AATGCACGTTATCTCCCACGACCCATACGCACCTGCAGACAGAGCCCGCGCCATGGGAGTGGAACTAGTCTCCTTCGACCAAGCTATCTCCACCGCCGAC TTCATCTCCCTCCACATGCCCCTCACTCCGACCACCAAGAAAATGCTCAACGACGACACCTTTGCCAAGATGAAGGACGGTGTCCGCATCGTCAATGTCG CCAGGGGAGGCGTCATCGACGAGGACGCACTTGTCCGCGCCCTCGACTCCGGCAAGGTGGCCCAAGCCGCGCTAGACGTCTTCGGCGAGGGGCCGCCATC CAATGACGGGAGCATCAGCAGGCAGCTCGCCCAGCACGAGCGGGTCACCGCGACGCCCCATCTAGGCGACGCACCATCGAGGAGCGAGCGCGAAGGAGGC CCAGGCAGGCGTGACGATCGAGATTGCCGAGGCCGTGGTCGGAGCGCTGAACGGCGAGCTGGCTGCCACCGCAGTAAACGCACCGATGGTGTCTCCCGAG GTGTTGACCGAGCTCGCACCATTCATAACACTAGCGGAGAAGCTTGGGAGACTGGCGGTGCAACTAGCGTCCGGAGGCAGAGGGATTCAATCCGTTAA
AA sequence Show only first row Show all	>Lus10037334 pacid=23152540 polypeptide=Lus10037334 locus=Lus10037334.g ID=Lus10037334.BGIv1.0 annot-version=v1.0 MARNVAQADASVKSGNQLFLVPSKRKMATDQVRRRIYGGQNTSRDGIRQMRCGEVGSEVARRAKGLGMHVISHDPYAPADRARAMGVELVSFDQAISTAD FISLHMPLTPTTKKMLNDDTFAKMKDGVRIVNVARGGVIDEDALVRALDSGKVAQAALDVFGEGPPSNDGSISRQLAQHERVTATPHLGDAPSRSEREGG PGRRDDRDCRGRGRSAERRAGCHRSKRTDGVSRGVDRARTIHNTSGEAWETGGATSVRRQRDSIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037334 [exp]	0	1
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	1.0	0.9517
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10035758 [exp]	2.0	0.8751
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	7.2	0.8148
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	14.6	0.8168
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	18.0	0.8049
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	19.3	0.7549
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	22.6	0.7827
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	23.2	0.8032
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	25.4	0.8023
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	31.6	0.7727

Compare expression of checked genes

Lus10037334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.