Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 68 / 8e-13 unknown protein AT1G30140 61 / 2e-10 unknown protein AT4G02210 46 / 3e-05 unknown protein AT2G24960 45 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035759 [exp] 621 / 0 AT5G27260 74 / 6e-15 unknown protein Lus10032348 [exp] 508 / 0 AT5G27260 52 / 2e-07 unknown protein Lus10012077 [exp] 286 / 1e-95 AT5G27260 50 / 5e-07 unknown protein Lus10014160 [exp] 225 / 6e-72 ND 47 / 6e-06 Lus10024751 [exp] 165 / 3e-50 AT1G30140 54 / 4e-09 unknown protein Lus10019607 [exp] 140 / 1e-39 ND / Lus10000529 [exp] 134 / 5e-38 ND 37 / 0.005 Lus10007175 [exp] 136 / 3e-37 AT5G27260 67 / 2e-12 unknown protein Lus10032874 [exp] 98 / 3e-23 AT5G27260 53 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163248 [exp] 52 / 2e-07 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 51 / 3e-07 AT4G02550 77 / 7e-16 unknown protein Potri.006G196716 [exp] 50 / 6e-07 AT4G02550 69 / 2e-13 unknown protein Potri.015G008050 [exp] 50 / 8e-07 AT4G02550 77 / 2e-16 unknown protein Potri.011G088750 [exp] 50 / 9e-07 AT4G02550 79 / 3e-17 unknown protein Potri.009G022650 [exp] 50 / 1e-06 AT4G02550 79 / 7e-17 unknown protein Potri.003G047151 [exp] 49 / 1e-06 AT4G02550 69 / 3e-13 unknown protein Potri.001G157750 [exp] 49 / 1e-06 AT4G02550 73 / 6e-15 unknown protein Potri.002G206500 [exp] 49 / 2e-06 AT4G02550 88 / 4e-20 unknown protein Potri.012G061366 [exp] 48 / 3e-06 AT4G02550 71 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037335 pacid=23152461 polypeptide=Lus10037335 locus=Lus10037335.g ID=Lus10037335.BGIv1.0 annot-version=v1.0 ATGGCAAGAAAGAGGAAGGATGAGGTTGATGGTGAATCAGGACGAAAGTACTTCCCGTGGACTGACGAGTTAGATCAAATTCTTGTTAAGTGCATCATCA CTCTAGTTGAGAATAAGAAGATCGGTGCAAAGGGAAAGTTCCTCCTTGGCGCTTACAAGGAACTAGAACGGCTGATGGAAGAGGAGAAACCAGGTTGCGG AGTGAAGGCCGACCCCAACATCATTTCTAGATGCAAAACCCTAAAGAGAAAATTCTTAGCTGTGCAGGAGTTACGAGGTTTAAGTGGTTCAGGTTGGGAT GATACGAATAAGATGGTTATTATTGAGGACAAGGCTTATGCCGATTACGTTGAGAAACATAGTCATTGTGCAAAGTTGAACCGGGTTCCTTTTCGATGCT ATGATGGCTTAGCAGTTGTATTTGGGAAGGTTCGTGCTACTGGCGGAGGGGCTGTTGGGTTGGAAGAGTTGGATCAGGCATGTCCTAAGATTGAGGTACC AAAGATAATTATGTTGGGCTGGAAGAATTCGGATGATGGGGTTCACGTTGATCAAACAGATACAAGTGAGCAGCATAACGAAGAACATGGCACAAAACAT GACACGGAGAAAGATAGCAATCCCAATGACCAAACAGAGTTTGTTGTACCGGATGAAGAACACAACCCTCCAACACCTTCTGAGAAGGCCGCTCAATCCG AAGCCACTAGCCACCCAAAGAGGGTTCGTCGATCTAGTATTGAATTCGGGGGCGAGATGTGGGAGTTGAAGCTAATGATTAAGGAAACAATCGATGCGCT TCGGTCAATGTTCGAGGAATCTGATACCATCCACAAGCAGAGGAACATGCTGTACAAAGAGCTTGGAAAAATCGGTCTTACCGAGGATCAGGTAATGGAT GCGACGTTAAGCCTTGGAAAGGACGACAAAATGCTACAAATATTCTTCAACATGGATTCGGATCATGCCCGGAAACACTTCATCTTAGGTCTACTTCGTT CAAGTTGA
AA sequence Show only first row Show all	>Lus10037335 pacid=23152461 polypeptide=Lus10037335 locus=Lus10037335.g ID=Lus10037335.BGIv1.0 annot-version=v1.0 MARKRKDEVDGESGRKYFPWTDELDQILVKCIITLVENKKIGAKGKFLLGAYKELERLMEEEKPGCGVKADPNIISRCKTLKRKFLAVQELRGLSGSGWD DTNKMVIIEDKAYADYVEKHSHCAKLNRVPFRCYDGLAVVFGKVRATGGGAVGLEELDQACPKIEVPKIIMLGWKNSDDGVHVDQTDTSEQHNEEHGTKH DTEKDSNPNDQTEFVVPDEEHNPPTPSEKAAQSEATSHPKRVRRSSIEFGGEMWELKLMIKETIDALRSMFEESDTIHKQRNMLYKELGKIGLTEDQVMD ATLSLGKDDKMLQIFFNMDSDHARKHFILGLLRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10037335 [exp]	0	1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	3.9	0.8016
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017319 [exp]	15.7	0.8012
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	20.0	0.7628
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	23.0	0.7868
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	23.5	0.7937
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10023104 [exp]	27.9	0.7836
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	30.0	0.7685
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	37.6	0.7813
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	43.8	0.7510
AT5G27990			Pre-rRNA-processing protein TS...		Lus10002404 [exp]	46.4	0.7699

Compare expression of checked genes

Lus10037335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.