Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14030 815 / 0 SBP1 selenium-binding protein 1 (.1.2) AT4G14040 806 / 0 SBP2, EDA38 EMBRYO SAC DEVELOPMENT ARREST 38, selenium-binding protein 2 (.1) AT3G23800 776 / 0 SBP3 selenium-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035760 [exp] 989 / 0 AT4G14030 808 / 0.0 selenium-binding protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321600 [exp] 877 / 0 AT4G14030 826 / 0.0 selenium-binding protein 1 (.1.2) Potri.017G060000 [exp] 866 / 0 AT4G14030 806 / 0.0 selenium-binding protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF05694 [flax] [poplar] SBP56 56kDa selenium binding protein (SBP56)
Representative CDS sequence Show only first row Show all	>Lus10037336 pacid=23152369 polypeptide=Lus10037336 locus=Lus10037336.g ID=Lus10037336.BGIv1.0 annot-version=v1.0 ATGGGAACAGAGGTTCTAACAACTAAGAGCAATGGCTCCGCCTGCTGCACCCACAACAAAGGACCTGGTTATGCTTCCCCTTTGCAAGCCATGTCCGGTC CTAAGGAGTCTCTCCTTTACACCACTTGCGTCTATACTGGAACTGGAATTGAGAAGCCTGATTTCCTAGCTACAGTGGACGTAGACCCGAATTCCCCAAC TTATTCACAAGTTATCCACAGGCTACCGATGCCCAATTTGGGGGATGAACTCCATCACTCTGGATGGAATTCCTGCAGCTCTTGCCATGGGGACCCTTCT GCTTCCCGCCGCTTCCTTGTCCTCCCTTCATTAGTTTCTGGCCGCATATATGCGGTTGATACTCAAAAGGATCCAAGGGCTCCATCTCTACACAAGGTGG TAGAGGGTGCTGACATTGTAGCAAAGACAGGATTGGCATATCCACACACCGCTCATTGCCTTGGCTCTGGCGATATCATGGTCTCTTGTCTTGGAGATAA AGATGGAAATGCTGAGGGGCTCGGGTTTCTTCTCCTCGATTCCGAGTTTAATGTCAAAGGAAGGTGGGAAAAGCTAGGCCATTCTCCTTTGTTTGGCTAT GATTTCTGGTACCAGCCGCGGCACAACACCATGATAAGCACATCTTGGGGAGCTCCTGCTGCATTTACCAAAGGCTTCAACCTGCAGCACGTATCAGACG GCCTTTATGGAAGGCATCTCTATGTGTACAATTGGTCGACCGGTGAACTGAAACAGCAGCTGGATCTAGGCAACACTGGCCTCCTACCATTGGAGATAAG GTTCCTGCATGATCCTTCCAAAGACACAGGGTTTGTTGGTTGTGCCTTGTCAAGTAACATGGTGAGGTTTTTCAGGAATGCTGATGACACCTGGAATCAT GAGCTGGCAATATCGGTGAAACCCCTGAAGGTGAAGAACTGGATTCTCCCAGAGATGCCCGGACTAATAACAGATTTCCTGCTGTCTCTGGACGATCGGT TTCTCTACTTCGTCAACTGGCTTCACGGGGACATCCGACAGTACAACATCGAGGACGTGAAGAATCCGGTGCTGACAGGACAGGTATGGGTTGGGGGACT GTTGCAGAAAGGAAGCCCCATAGTGGTTGAGAATGAGGATGGTAGCACCTGGCAAGTTGATGTTCCAGAGATTCAGGGAAAGCGGCTGAGAGGAGGACCA CAGATGATTCAGCTAAGCCTAGACGGGAAGAGGCTGTACGTGACGAACTCACTCTTCAGCGCGTGGGATAAGCAGTTCTACCCGGAAATTGTGGAGAAAG GGTCTCACATGCTGCAGATTGATGTCGACACAGAGAAAGGTGGACTGGGAATAAACCCGAACTTCTTTGTGGACTTTGGGGATGAGCCTGGTGGTCCGTC GTTGGCTCATGAGATGAGATATCCAGGTGGTGACTGCACCTCAGACATATGGATCTAA
AA sequence Show only first row Show all	>Lus10037336 pacid=23152369 polypeptide=Lus10037336 locus=Lus10037336.g ID=Lus10037336.BGIv1.0 annot-version=v1.0 MGTEVLTTKSNGSACCTHNKGPGYASPLQAMSGPKESLLYTTCVYTGTGIEKPDFLATVDVDPNSPTYSQVIHRLPMPNLGDELHHSGWNSCSSCHGDPS ASRRFLVLPSLVSGRIYAVDTQKDPRAPSLHKVVEGADIVAKTGLAYPHTAHCLGSGDIMVSCLGDKDGNAEGLGFLLLDSEFNVKGRWEKLGHSPLFGY DFWYQPRHNTMISTSWGAPAAFTKGFNLQHVSDGLYGRHLYVYNWSTGELKQQLDLGNTGLLPLEIRFLHDPSKDTGFVGCALSSNMVRFFRNADDTWNH ELAISVKPLKVKNWILPEMPGLITDFLLSLDDRFLYFVNWLHGDIRQYNIEDVKNPVLTGQVWVGGLLQKGSPIVVENEDGSTWQVDVPEIQGKRLRGGP QMIQLSLDGKRLYVTNSLFSAWDKQFYPEIVEKGSHMLQIDVDTEKGGLGINPNFFVDFGDEPGGPSLAHEMRYPGGDCTSDIWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10037336 [exp]	0	1
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	9.8	0.9469
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10027752 [exp]	17.8	0.9425
AT1G17860			Kunitz family trypsin and prot...		Lus10022302 [exp]	19.9	0.9388
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	26.2	0.9363
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	35.2	0.9345
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	36.9	0.9353
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	39.5	0.9029
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	39.8	0.9234
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	40.1	0.9352
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	41.1	0.8839

Compare expression of checked genes

Lus10037336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.