Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55915 210 / 4e-66 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016607 [exp] 207 / 8e-65 AT1G55915 431 / 4e-150 zinc ion binding (.1) Lus10035761 [exp] 196 / 1e-64 AT1G55915 134 / 4e-39 zinc ion binding (.1) Lus10035762 [exp] 149 / 2e-44 AT1G55915 155 / 2e-45 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009700 [exp] 263 / 5e-88 AT1G55915 314 / 2e-105 zinc ion binding (.1) Potri.011G092900 [exp] 221 / 4e-70 AT1G55915 429 / 5e-149 zinc ion binding (.1) Potri.010G249400 [exp] 143 / 9e-42 AT1G55915 157 / 3e-45 zinc ion binding (.1) Potri.014G160400 [exp] 57 / 2e-09 AT5G35690 440 / 2e-146 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others CL0126 [flax] [poplar] Peptidase_MA PF08325 [flax] [poplar] WLM WLM domain
Representative CDS sequence Show only first row Show all	>Lus10037337 pacid=23152423 polypeptide=Lus10037337 locus=Lus10037337.g ID=Lus10037337.BGIv1.0 annot-version=v1.0 ATGGATCTTAATGATCTGAACAAGGTTTGGGAAATCAAGCCGCTGAAGATGATTGGAGAAGATGAGGCCAAGATAATTCTTGAAAAGATAGCAAAACAGG TGCAGCCGATCATGCGCAGGAGGAAATGGAAAGTCACAGTGCTCTCTGAGTTCTGCCCTTCCAATCCGTCACTTATGGGTTTGAACATTGGTGGAGGGGC AGAGGTCAAGCTTAGACTGCGGAGGGCAAACAACCAATGGGATTTCTTCCCTTATGAACAGATTCTCGACACCATGTTGCATGAGCTTTGCCACAATGAA TTCGGCCCTCACAATTCCCACTTCTACAACCTTCTTGATGAAATTAGGAAGGAATGTGAAGAGCTGATGGCTAAAGGGATTACTGGAACTGGTGAAGGGT TTGATCGTCCAGGTAGACGCTTGGGAGGGCCTGGTAATTCCTCTTGTGGTTCCTCGAGTCACCAGGAGCTTTCCCGTGGCCAAGGAGGATGGCAATGTGA TGATTGTACTTTGTTGAATCAGCAAATGTCTGTGCGGTGTGAAGCCTGCGAGACTCCTAGACGAAAAGATGGCGCGAAGTTGAAGATATGGTGTTGCAAG TTTTGCACTTTGGAGAACAGTTCAGAGGTAGATAGGTGCTTGGCTTGTGGGGAATGGAGATACTCCTACGGCCCGCCTGCGTCCGCTCAGTATGGGCAGC ATCACTATGCCTAA
AA sequence Show only first row Show all	>Lus10037337 pacid=23152423 polypeptide=Lus10037337 locus=Lus10037337.g ID=Lus10037337.BGIv1.0 annot-version=v1.0 MDLNDLNKVWEIKPLKMIGEDEAKIILEKIAKQVQPIMRRRKWKVTVLSEFCPSNPSLMGLNIGGGAEVKLRLRRANNQWDFFPYEQILDTMLHELCHNE FGPHNSHFYNLLDEIRKECEELMAKGITGTGEGFDRPGRRLGGPGNSSCGSSSHQELSRGQGGWQCDDCTLLNQQMSVRCEACETPRRKDGAKLKIWCCK FCTLENSSEVDRCLACGEWRYSYGPPASAQYGQHHYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	4.4	0.8569
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	6.0	0.8532
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	7.1	0.8343
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	11.7	0.8308
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	12.6	0.8299
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	13.0	0.8190
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	16.0	0.8098
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	16.4	0.8064
					Lus10031757 [exp]	17.7	0.7759
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	21.0	0.8181

Compare expression of checked genes

Lus10037337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.