Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01730 732 / 0 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT1G61010 323 / 2e-103 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT5G23880 145 / 4e-37 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT3G07530 62 / 6e-10 unknown protein AT5G63420 47 / 4e-05 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT2G04530 43 / 0.0004 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035763 [exp] 942 / 0 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10015460 [exp] 233 / 8e-70 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10021705 [exp] 120 / 6e-29 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035061 [exp] 120 / 9e-29 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10001371 [exp] 66 / 2e-12 AT1G61010 206 / 5e-68 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10016758 [exp] 50 / 3e-06 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10014623 [exp] 49 / 8e-06 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10033809 [exp] 48 / 9e-06 AT2G04530 540 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10011289 [exp] 48 / 2e-05 AT3G07530 557 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106200 [exp] 832 / 0 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.017G076132 [exp] 315 / 4e-100 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076000 [exp] 315 / 5e-100 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 257 / 1e-78 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.001G231800 [exp] 143 / 1e-36 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Potri.004G236000 [exp] 50 / 2e-06 AT3G07530 674 / 0.0 unknown protein Potri.012G095800 [exp] 47 / 2e-05 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.014G160600 [exp] 45 / 6e-05 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.015G093600 [exp] 45 / 0.0001 AT5G63420 1230 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily CL0398 [flax] [poplar] RMMBL_DRMBL PF07521 [flax] [poplar] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [flax] [poplar] P-loop_NTPase PF10996 [flax] [poplar] Beta-Casp Beta-Casp domain
Representative CDS sequence Show only first row Show all	>Lus10037338 pacid=23152562 polypeptide=Lus10037338 locus=Lus10037338.g ID=Lus10037338.BGIv1.0 annot-version=v1.0 ATGAGCATCGAGTGCTTAGTTCTAGGTGCTGGGCAAGAAGTTGGGAAGAGCTGTGTCGTAGTGTCAGTCAATGGGAAACGCATCATGTTCGATTGCGGCA TGCACATGGCCTACGACGGTGATCTTCGTTACCCTAAGTTTTCTCTCATTTCAGAGTCTGGAGATTTCGATGCTGCTCTAGATTGTGTCATTATTACTCA CTTTCATCTGGACCATATTGGTGCGCTTCCTTACTTCACCCAAGTTTGTGGCTATAATGGCCCCATTTACATGACGTATCCGACAAAGGCCTTGGGTCCT CTGATGTTGGAGGATTTTCGGAAGGTATTGGTTGGAAGAAGTGGCGGCGAAGAGCAGTTCACTGCTGATCATATTTCCGAATGCATGAAGAAAGTCACTC CAGTTGATCTGAAGCAGACTATACAAGTTGACAAGGATCTTCAAATTCGTGCCTATTATGCAGGACATGTTCTTGGAGCTGCGATGTTTTATGCGAAGGT AGGAGATGCATCTATGGTTTATACAGGTGACTACAATATGACCCCGGATAGACATCTTGGAGCTGCACAAATTGATCAACTGGAAGTTGATCTCGTGATA ACAGAGTCAACCTATGCAACAACCGTACGTGATTCAAAATACGCTCGGGAGAGGGAGTTTCTTAAAGCTGTTCACACATGTGTTGCTGGTGGAGGAAAGG TGTTGATTCCTACTTTTGCACTCGGAAGAGCTCAGGAGCTGTGCATTTTACTGGATGACTACTGGGAACGCATGAACCTGAAGGTTCCTATATACTTCTC TTCAGGTTTGACGAAACAAGCTAATATGTACTACAAAATCCTTATTAGCTGGACAAGTCAAAAGATCAAAGACACCTATGCACTGCGCAATCCATTCGAT TCTAAACATGTTGTGAGTTTCAATCGGTCACAGATAAATGCTCCTGGACCTTGTGTTCTCTTTGCCACACCTGGAATGATCAGTGGTGGCCTTTCACTGG AAGTATTCAAACAATGGGCTCCTTTTGAGGCAAATCTCGTGACGCTACCTGGATACTGCGTAACTGGAACAATCGGGAGCAAGCTTGTGGACGGTAAACG AACTAAGATCTATTTGGACAAGGACAGTGAGATAGATGTTCGCTGTAAGATCCATCAGTTATCCTTCAGTCCGCACACTGATTCCAAAGGAATCATGGAT CTTCTGAAATTCCTCTCTCCCAAGCACGTGATGCTAGTCCACGGTGAAAAACTCGGTATGACTACCTTGAAAGTGAAGGTTGAATCTGAACTGGGAATCC AATGCTACATGCCAGCGAATTGCGACACAGTGTACATTCCAAAAACCATCTTCGTTAAAGCTCATACCTCGGATGCATTCGCCAAGAGTTGCTTGAGTCC TAATTTCAGGTTCCCGAGATGTTCAACTGACGAATGCAGCAGATGA
AA sequence Show only first row Show all	>Lus10037338 pacid=23152562 polypeptide=Lus10037338 locus=Lus10037338.g ID=Lus10037338.BGIv1.0 annot-version=v1.0 MSIECLVLGAGQEVGKSCVVVSVNGKRIMFDCGMHMAYDGDLRYPKFSLISESGDFDAALDCVIITHFHLDHIGALPYFTQVCGYNGPIYMTYPTKALGP LMLEDFRKVLVGRSGGEEQFTADHISECMKKVTPVDLKQTIQVDKDLQIRAYYAGHVLGAAMFYAKVGDASMVYTGDYNMTPDRHLGAAQIDQLEVDLVI TESTYATTVRDSKYAREREFLKAVHTCVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSSGLTKQANMYYKILISWTSQKIKDTYALRNPFD SKHVVSFNRSQINAPGPCVLFATPGMISGGLSLEVFKQWAPFEANLVTLPGYCVTGTIGSKLVDGKRTKIYLDKDSEIDVRCKIHQLSFSPHTDSKGIMD LLKFLSPKHVMLVHGEKLGMTTLKVKVESELGIQCYMPANCDTVYIPKTIFVKAHTSDAFAKSCLSPNFRFPRCSTDECSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10037338 [exp]	0	1
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	6.5	0.7701
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	13.9	0.8326
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10027652 [exp]	21.7	0.7068
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	28.4	0.7700
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	40.9	0.7503
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	61.4	0.7359
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	75.4	0.7372
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10026902 [exp]	75.5	0.6935
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10025270 [exp]	101.4	0.7221
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	161.3	0.6987

Compare expression of checked genes

Lus10037338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.