Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21220 198 / 1e-62 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 199 / 2e-62 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G73500 104 / 8e-27 ATMKK9 MAP kinase kinase 9 (.1) AT3G06230 102 / 5e-26 ATMKK8 MAP kinase kinase 8 (.1) AT1G18350 102 / 9e-26 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT4G29810 96 / 2e-23 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 85 / 2e-19 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G56580 78 / 9e-17 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT1G32320 74 / 1e-15 ATMKK10 MAP kinase kinase 10 (.1) AT3G48750 64 / 4e-12 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035764 [exp] 315 / 3e-108 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10040127 [exp] 86 / 1e-20 AT1G73500 164 / 1e-50 MAP kinase kinase 9 (.1) Lus10012938 [exp] 85 / 3e-19 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10034986 [exp] 85 / 5e-19 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10027623 [exp] 78 / 1e-16 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10039167 [exp] 68 / 5e-13 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10013766 [exp] 68 / 6e-13 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10021766 [exp] 66 / 4e-12 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10002096 [exp] 65 / 5e-12 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009800 [exp] 237 / 2e-77 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 235 / 6e-77 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 107 / 9e-28 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.015G030700 [exp] 102 / 5e-26 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.006G146500 [exp] 90 / 4e-21 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G050800 [exp] 89 / 2e-20 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.001G138800 [exp] 86 / 7e-20 AT1G32320 231 / 7e-75 MAP kinase kinase 10 (.1) Potri.018G068500 [exp] 86 / 9e-20 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.008G183700 [exp] 81 / 4e-18 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.010G049500 [exp] 81 / 6e-18 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037339 pacid=23152457 polypeptide=Lus10037339 locus=Lus10037339.g ID=Lus10037339.BGIv1.0 annot-version=v1.0 ATGAAACCTATTCACTCTCCTCCGGGTACCTCCGTACAATCCGTCTCCTCCCCGTCGTCATCTAATCGGAAGCCTCGCAAGCGTCCTGACCTAATCCTAC CTCTGCCGCCTCGTGAGCCCAAGATCGCCGTTCCTCTCCCTCTCCCTCCCAACTCCGCACCCTCCGCCACACACCCGCACCCGGCTCACCAGGCCATCAG CTTCTCCGAGCTCGATCGGATGAACCGGATTGGCAGCGGCAGCGGAGGCACTGTCTACAAGGTCGTCCACCGACTCACTGGCCGCGTCTTCGCCCTCAAG GTCATCTACGGTAACCACGAGGACTCCGTACGCAACCAGATCTGCCGCGAGATCAAGATTCTCCGGGACGTCAACCACTCGAATGTTGTCAAGTGTCACG ATATGTACGACGCCAACGGCGAGATCCAGGTTCTTCTCGAGTTCCTCGACGGTGGATCCCTCGAAGGAGCTCACATAGCTAACGAGTCTCATTTGTCTGA CGTGGCTCGTCAGATGTTGAGCGGAATTGCTTACCTTCACCGCCGGAAGATAGTCCACACGATGGTTACGCTGGGGACATTTGGAGCTTGGGAGTCAGCA TCTTGGAGTTCTACTTGGGTAGATTTCCATTTGCAGTTGGGAGGCAGGGCGATTGGGCGAGCTTGA
AA sequence Show only first row Show all	>Lus10037339 pacid=23152457 polypeptide=Lus10037339 locus=Lus10037339.g ID=Lus10037339.BGIv1.0 annot-version=v1.0 MKPIHSPPGTSVQSVSSPSSSNRKPRKRPDLILPLPPREPKIAVPLPLPPNSAPSATHPHPAHQAISFSELDRMNRIGSGSGGTVYKVVHRLTGRVFALK VIYGNHEDSVRNQICREIKILRDVNHSNVVKCHDMYDANGEIQVLLEFLDGGSLEGAHIANESHLSDVARQMLSGIAYLHRRKIVHTMVTLGTFGAWESA SWSSTWVDFHLQLGGRAIGRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037339 [exp]	0	1
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	5.3	0.8308
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	7.9	0.8052
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	7.9	0.8535
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	10.8	0.8180
					Lus10037253 [exp]	11.2	0.8455
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	12.7	0.8467
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	13.1	0.8292
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	16.4	0.8348
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	16.4	0.7604
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	19.0	0.8397

Compare expression of checked genes

Lus10037339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.