Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21220 95 / 5e-25 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 83 / 1e-20 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G73500 58 / 1e-11 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 57 / 2e-11 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT2G32510 54 / 2e-10 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G05100 52 / 1e-09 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT5G67080 48 / 3e-08 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G50310 47 / 9e-08 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G08480 46 / 3e-07 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G08500 45 / 5e-07 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035764 [exp] 141 / 6e-43 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10035284 [exp] 56 / 5e-11 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10003677 [exp] 54 / 7e-11 AT3G21220 102 / 3e-27 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Lus10030042 [exp] 55 / 2e-10 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10040128 [exp] 47 / 3e-08 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10042750 [exp] 48 / 4e-08 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10012668 [exp] 48 / 6e-08 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10003745 [exp] 48 / 6e-08 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10001081 [exp] 47 / 7e-08 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249300 [exp] 95 / 4e-25 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 89 / 5e-23 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 66 / 2e-14 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.015G030700 [exp] 64 / 5e-14 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.014G047101 [exp] 59 / 6e-13 AT3G21220 83 / 9e-20 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G183700 [exp] 61 / 9e-13 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.010G049500 [exp] 61 / 1e-12 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.011G007400 [exp] 52 / 1e-09 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G007700 [exp] 51 / 2e-09 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.014G155000 [exp] 51 / 4e-09 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037340 pacid=23152358 polypeptide=Lus10037340 locus=Lus10037340.g ID=Lus10037340.BGIv1.0 annot-version=v1.0 ATGTCGCAGCCACCGGAGGCTCCGGCAACTGCTTCCAGGGAGTTTAGAGATTTCATCGCTTGTTGTTTGCAGAGGGAACCAGGGAGGAGATGGACTGCTG TGCAGTTGTTGAATCATCCCTTCATAGTGAGGAGCAATGGAGGGCCAAAAGAAGGGAGCCAGAACCTGCACCAATTACTGCCTCCTCCACGCCCACTCTC ATCATAG
AA sequence Show only first row Show all	>Lus10037340 pacid=23152358 polypeptide=Lus10037340 locus=Lus10037340.g ID=Lus10037340.BGIv1.0 annot-version=v1.0 MSQPPEAPATASREFRDFIACCLQREPGRRWTAVQLLNHPFIVRSNGGPKEGSQNLHQLLPPPRPLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	0	1
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	1.7	0.8820
AT3G48030			hypoxia-responsive family prot...		Lus10002358 [exp]	2.0	0.8520
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	3.5	0.8324
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037339 [exp]	5.3	0.8308
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	7.7	0.8111
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	8.9	0.8256
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	12.4	0.8209
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	15.7	0.8165
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	18.3	0.7993
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	20.2	0.7704

Compare expression of checked genes

Lus10037340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.