Plant FIBer expression Database

Lus10037343 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09645 65 / 2e-13 unknown protein
AT1G57765 61 / 7e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G226100
[exp]
62 / 2e-12 AT1G57765 / unknown protein
Potri.003G005400
[exp]
62 / 3e-12 AT1G09645 56 / 2e-11 unknown protein
Potri.019G077100
[exp]
47 / 7e-07 AT1G09645 56 / 2e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10037343 pacid=23152565 polypeptide=Lus10037343 locus=Lus10037343.g ID=Lus10037343.BGIv1.0 annot-version=v1.0
ATGGCCGTGGAATCAAAAGCTGTTCTTGACTACAGAGTTCCCCTCTGCTGGCTGGCTGGTGTTTATTTGGTCGGCGGGGAAGACGAGGGGGGATTAAGGT
TTGCAGAAGGCAAGAAGGAGAGGAAGCGAAGTGGACAGGCAGGCCGCAGCAGCCTAATGAAAAATATTATATTATTCAATATAAAATTTGATAGAAAGAA
CAACACACTCTTTCTCTCTCCTTTTCCTTCTTCTGTTACAACTTCAATTCATCCATTGGTGGGGAGGAAGAACCACACCTCAACAAAACTCGCTCTGCTT
AACTCCCACGGAAACTCCGTCACCCACCGATCAACCACAAACCTACCTCCGTCAGAGATTACATCACGACAACAAGTTCCTAGTAATCACAAATTGGATC
AATTGAAAGAGCAGCAGCCGGCGCCGACGAGGACAACGACAGACAAACAGACCACAGGGAGAGGGATGAGAGGGATCTCAAGAACCGCCCGATCCGCTTT
CCCTTGGCGTTTCCTCTTCTTTCTCACCTCCCTCTCGCTCCACTTCCTCTCTGGCTTCTGTGACGACCCTAAGAATGATGCAAAGAATGCTGATTCTGGT
AGCCATACTGGCCGTAAGATTCTCTTCATATTTGTAGGGATTGTGGCAGTTGGGTTGTTTTCATTTTTCCTTTTCAAGTTCTGGCAAAAGAAGAAAAGAG
AAGAGCAATACGCCCGCCTGCTAAAGTTGTTTGAAGAGGATGATGAGCTGGAGGTTGAGCTTGGCCTCCGAGATTGA
AA sequence
>Lus10037343 pacid=23152565 polypeptide=Lus10037343 locus=Lus10037343.g ID=Lus10037343.BGIv1.0 annot-version=v1.0
MAVESKAVLDYRVPLCWLAGVYLVGGEDEGGLRFAEGKKERKRSGQAGRSSLMKNIILFNIKFDRKNNTLFLSPFPSSVTTSIHPLVGRKNHTSTKLALL
NSHGNSVTHRSTTNLPPSEITSRQQVPSNHKLDQLKEQQPAPTRTTTDKQTTGRGMRGISRTARSAFPWRFLFFLTSLSLHFLSGFCDDPKNDAKNADSG
SHTGRKILFIFVGIVAVGLFSFFLFKFWQKKKREEQYARLLKLFEEDDELEVELGLRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09645 unknown protein Lus10037343
[exp]
0 1
AT3G05545 RING/U-box superfamily protein... Lus10031491
[exp]
7.2 0.8107
AT4G29130 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDO... Lus10006843
[exp]
10.2 0.8367
AT3G59110 Protein kinase superfamily pro... Lus10029788
[exp]
10.8 0.8549
AT5G19780 TUA5 tubulin alpha-5 (.1) Lus10005705
[exp]
16.1 0.8194
AT4G21450 PapD-like superfamily protein ... Lus10039757
[exp]
16.4 0.8224
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10012162
[exp]
21.5 0.8529
AT4G34490 ATCAP1 cyclase associated protein 1 (... Lus10023575
[exp]
21.6 0.8179
AT3G20800 Cell differentiation, Rcd1-lik... Lus10009728
[exp]
23.5 0.7898
AT4G17950 AT-hook AT hook motif DNA-binding fami... Lus10030962
[exp]
28.6 0.8121
AT4G31080 Protein of unknown function (D... Lus10009547
[exp]
29.2 0.7978

Lus10037343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.