Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 199 / 9e-58 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035769 [exp] 577 / 0 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2) Lus10037347 [exp] 382 / 2e-132 AT1G33980 70 / 9e-14 Smg-4/UPF3 family protein (.1.2) Lus10003510 [exp] 130 / 6e-34 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2) Lus10009488 [exp] 110 / 5e-26 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225800 [exp] 422 / 8e-144 AT1G33980 241 / 1e-73 Smg-4/UPF3 family protein (.1.2) Potri.003G005700 [exp] 390 / 4e-131 AT1G33980 256 / 3e-79 Smg-4/UPF3 family protein (.1.2) Potri.019G077500 [exp] 176 / 6e-49 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03467 [flax] [poplar] Smg4_UPF3 Smg-4/UPF3 family
Representative CDS sequence Show only first row Show all	>Lus10037346 pacid=23152446 polypeptide=Lus10037346 locus=Lus10037346.g ID=Lus10037346.BGIv1.0 annot-version=v1.0 ATGCCTGAAACATTTTGCAGTCAGAAGCATCAATCCTATTCGAGGGTCTACATTGACTTCAAAACACCGGAAGATGTAATTGACTTTGCAGAGTTCTTTA ATGGGCATATGTTCGTCAATGAGAAGGGAACTCAGTTTAAAGCTGTTGTTGAGTATGCTCCCTCTCAACGTGTTCCTAAACAATTATCCAAGAAGGATGG TCGTGAAGGCTCGATATCCAAAGACCCGGAGTATCTAGAATTCCTTGAAGCTATTTCAAAGCCTGTCGAGAACCTTCCTAGTGCAGAAATTCAGCTGGAA AGAAGGGAAGCTGAAAGAGCTGGTACTGTGAAAGATGCTGTTATTGTCACGCCTCTGATGGACTTTATCCGGCAAAAACGAGCTGCCAAGAATGGCTCTC GGAGGGTACCGGCCAATGGAAAAATTGGCAGAAGGGCTCCTACAAGCGGAAGTCCTAGCTCATCATCAAAACGGGGTTCTGACAAGAAGAGGACTTCGAC AATGGAGGATATGGTTGCTGGTAGGTTAGCTGAGGCTGCCAGGGGTGGAATATATTGTGTGATCGGCAGGTCTGCCTTGTACGACCTTTATGTTTTGAGG GATTCAGCAAAAGGTGGAGCTGGAAAAGATAAATCAACGTACATGCTTGTTTCTAAGCGAGATGATCATGCATCATCAGACAAAGCTGTTACTTCTTCTG GACTTGAAGGTTTAGAAGATGGAAGTGGGTTTGCTGGCATCACTGATGGCGGGAAAAAGAAAATTCTACTTTTGAAAGGGAAAGAGAAAGAGATTCCATC TGTCTCTGGTGGTCCGATGCGGCAACAGAATGTCATAGCATCTGGAAAACATGCAACTAGTTCATCTGCAGTCAAACAGAATCACCGTCGTGAAGCTGGT GGTAGGATAATAAGGAGCATACTTTTAAAAGATCCCCATCAAGCTTCTGATGCACACTCTGAGCAGCAAAACCAGTCAATCCTTAACAAGGACAAGCGTC CTCCTCGAGCTCCACAAGGGCAGGTGGCTCTGAAGGATGCTAATGGGACTCCAGATGACAAGGCTGCTGGGAATGAGTCGCTTGCTAGTGAAAAGCATGA AAGGCGCACACGAAATAAGGATAGACCTGATCGTGTTGTTTGGACTCCGCTTCGCAGGTCTGATGGATCGTATGCAAGTGATGAGTCCTTATCGTCATCT GCATCTCAATCTGCTGTTTCAAGCATTGATTCTTCTCAAGCAGCTGTGGGAGATGTCAGAATTGATATACCAAGTTCAAGGAGTGATGCAAAAGGATTTG TGACTGGTCGTAACAGTCATTCTTCAATGGACAATGGATCACACAAGCATTTTGGTCGTCGTGCGCCGCCTCATGTTCAAAAGGATTCTGATAGCCCATC CGTTGATATGAAGGCATCTACTTCCAAGAGAGGTGGTGTTTCTGGTCATGAGGTGGGTGATGGCATACTCCCCGGGTTTTAG
AA sequence Show only first row Show all	>Lus10037346 pacid=23152446 polypeptide=Lus10037346 locus=Lus10037346.g ID=Lus10037346.BGIv1.0 annot-version=v1.0 MPETFCSQKHQSYSRVYIDFKTPEDVIDFAEFFNGHMFVNEKGTQFKAVVEYAPSQRVPKQLSKKDGREGSISKDPEYLEFLEAISKPVENLPSAEIQLE RREAERAGTVKDAVIVTPLMDFIRQKRAAKNGSRRVPANGKIGRRAPTSGSPSSSSKRGSDKKRTSTMEDMVAGRLAEAARGGIYCVIGRSALYDLYVLR DSAKGGAGKDKSTYMLVSKRDDHASSDKAVTSSGLEGLEDGSGFAGITDGGKKKILLLKGKEKEIPSVSGGPMRQQNVIASGKHATSSSAVKQNHRREAG GRIIRSILLKDPHQASDAHSEQQNQSILNKDKRPPRAPQGQVALKDANGTPDDKAAGNESLASEKHERRTRNKDRPDRVVWTPLRRSDGSYASDESLSSS ASQSAVSSIDSSQAAVGDVRIDIPSSRSDAKGFVTGRNSHSSMDNGSHKHFGRRAPPHVQKDSDSPSVDMKASTSKRGGVSGHEVGDGILPGF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037346 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10035769 [exp]	1.0	0.9359
AT4G32160			Phox (PX) domain-containing pr...		Lus10001495 [exp]	4.0	0.8684
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	8.0	0.8766
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	8.5	0.8708
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	9.7	0.8813
AT2G25730			unknown protein		Lus10007687 [exp]	11.4	0.8799
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	15.2	0.8717
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	16.2	0.8552
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	17.3	0.8511
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	17.9	0.8691

Compare expression of checked genes

Lus10037346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.