Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 60 / 2e-10 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037346 [exp] 381 / 3e-132 AT1G33980 259 / 5e-81 Smg-4/UPF3 family protein (.1.2) Lus10035769 [exp] 265 / 2e-86 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225800 [exp] 166 / 2e-48 AT1G33980 241 / 1e-73 Smg-4/UPF3 family protein (.1.2) Potri.003G005700 [exp] 155 / 1e-44 AT1G33980 256 / 3e-79 Smg-4/UPF3 family protein (.1.2) Potri.019G077500 [exp] 57 / 2e-09 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037347 pacid=23152526 polypeptide=Lus10037347 locus=Lus10037347.g ID=Lus10037347.BGIv1.0 annot-version=v1.0 ATGCGGCAACAGAATGTCATAGCATCTGGAAAACATGCAACTAGTTCATCTGCAGTCAAACAGAATCACCGTCGTGAAGCTGGTGGTAGGATAATAAGGA GCATACTTCTAAAGGATCCTCATCAAGCTTCTGATGCACACTCTGAGCAGCAAAACCAGTCAATCCTTAACAAGGACAAGCGTCCTCCTCGAGCTCCACA AGGGCAGGTGGCTCTGAAGGATGCTAATGGGACTCCAGATGACAAGGCTGCTGGGAATGAGTCGCTTGCTAGTGAAAAGCATGAAAGGCGCACACGAAAT AAGGATAGACCTGATCGTGTTGTTTGGACTCCGCTTCGCAGGTCTGATGGATCGTATGCAAGTGATGAGTCCTTATCGTCATCTGCATCTCAATCTGCTG TTTCAAGCATTGATTCTTCTCAAGCAGCTGTGGGAGATGTCAGAATTGATATACCAAGTTCAAGGAGTGATGCAAAAGGATTTGTGACTGGTCGTAACAG TCATTCTTCAATGGACAATGGATCACACAAGCATTTTGGTCGTCGTGCGCCGCCTCATGTTCAAAAGGATTCTGATAGCCCATCCGTTGATATGAAGGCA TCTACTTCCAAGAGAGGTGGTGTTTCTGGTCATGAGGTGGGTGATGGCATACTCCCCGGGTTTTAG
AA sequence Show only first row Show all	>Lus10037347 pacid=23152526 polypeptide=Lus10037347 locus=Lus10037347.g ID=Lus10037347.BGIv1.0 annot-version=v1.0 MRQQNVIASGKHATSSSAVKQNHRREAGGRIIRSILLKDPHQASDAHSEQQNQSILNKDKRPPRAPQGQVALKDANGTPDDKAAGNESLASEKHERRTRN KDRPDRVVWTPLRRSDGSYASDESLSSSASQSAVSSIDSSQAAVGDVRIDIPSSRSDAKGFVTGRNSHSSMDNGSHKHFGRRAPPHVQKDSDSPSVDMKA STSKRGGVSGHEVGDGILPGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037347 [exp]	0	1
AT4G20310			Peptidase M50 family protein (...		Lus10038402 [exp]	4.0	0.6046
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034562 [exp]	23.8	0.6214
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	25.5	0.5785
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	30.4	0.5659
					Lus10017053 [exp]	49.7	0.4765
AT4G39050			Kinesin motor family protein (...		Lus10017893 [exp]	64.0	0.5373
AT4G21570			Protein of unknown function (D...		Lus10011236 [exp]	158.9	0.5096
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	179.4	0.4873
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	224.0	0.4699

Compare expression of checked genes

Lus10037347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.