Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57770 811 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 156 / 1e-40 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT5G49555 42 / 0.0009 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035770 [exp] 853 / 0 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016199 [exp] 153 / 2e-39 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10029347 [exp] 152 / 4e-39 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10014308 [exp] 43 / 0.0009 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G005800 [exp] 875 / 0 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.016G066000 [exp] 156 / 2e-40 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 152 / 3e-39 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10037348 pacid=23152610 polypeptide=Lus10037348 locus=Lus10037348.g ID=Lus10037348.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTTCCGTATTCGCCGGTTACCTCCAACATTGCAGGTCCAACTCCAGCCTTCCTTCTTCCTTCTCCAGAAGAGCTTCAGTTTTGGCGC GAAGCTCCTCCAATGGCAGTCCACCTTCCACTAACGACAAGAAATCCTTTCTAGGTCTCCCCTCCCCTCAATTTGGCAAGGCAGAGGCAGATGTGGTGGT TATTGGTAGTGGGATTGGCGGGTTATGTTGTGCTGGACTTCTAGCTAGGTATGGGCAGGATGTTGTGGTACTTGAAAGCCATGATCAACCTGGAGGAGCG GCTCATGCCTTTGAGGTAAAAGGTTACAAGTTTGATTCCGGGCCTTCTTTGTTCTCTGGCTTTCAGTCCAGAGGTGTTCAGGCTAACCCCCTTGCACAGG TTCTTGATGCACTGGGGGAATCCATCCCTTGCGTAAGTTACGACTCTTGGATGGTCTATGTTCCTGAAGGAGAGTTCTTGTCGCGAATTGGACCTACAGA ATTCTACAAGGATCTTGAGAAGCATGCAGGCCCCAATGCTGTTCAAGAATGGAAGAAACTTCTTGATACTATACTACCATTGTCAGCAGCTGCAATGGCT CTGCCTCCTTTATCCATTCGAGGCGATCTCGGTGTTCTGTCGACTGCTGCTGCTAGATACGCGCCTTCTCTGTTGAAATCTTTCGGTGAGATTGGACCTC GGGGAGCCTTTGGTGCTACGAAGCTTCTGAGACCCTTCTCGGAAATTGTGGACTCGCTCGAGCTGAAAGACCCTTTCGTCCGGAATTGGGTGGATCTTCT GGCTTTCCTTCTTGCTGGTGTGAAATCTAGTGGTATACTCTCAGCAGAGATGATTTACATGTTTGCAGAATGGTACAAACCAGGCTGCAGCCTTGAGTAT CCTCTCCATGGTAGCGGAGCTATCGTGGATGCCCTTGTGCGCGGACTAGAAAAGTTTGGTGGACGATTATCTCTAAGAAACCATGTCGAAAAGATAGTTG TCGAAAACAACAGAGCCATTGGTGTTGAACTTAGGAGTGGTCAGACAGGAAAGTTAGATCTCCACGAAGTGATTTTGGGGAGCAAACTTTCTCCGTTGCC ATCTACATTTTATCCAACTTTCCACCTGCCAAACCAAACCTTAACCATGCCCGTAATAACTGGGAACTCCTTTTGGTGGCAGTTCATACGAGCAAGAAAG GCTGTCATAAGCAACGCGTCAATGTGGGATACGACCATTTTGCTGCCAAGAGAAGTCCTCCCAAAGTCATATCTAGAGAGGATCAACAGCACACCACAGT GTGAATCTTTCATGCATCTCCACTTAGGATTTGATGGGTGGGGTTTGCCGGATGATCTGGGAATTCATCACATAGTTGTGAATGACTGGGAGAGGGGAGT GGACGCAGACCAGAATGTGGTTCTTATATCAGTTCCCAGTGTTCTCAGTCCGGATTTGGCTCCTCCTGGGAAGCATGTTTTGCATGCTTATACTCCTGGA ACCGAGCCATTCGAGCTCTGGAAAGGGCTGGATCGGAAGAGCAATGAATACAAACAACTCAAAGAAGAAAGATCAGAGGTGATGTGGCGAGCTGTGGAAC GCGCTCTGGGTCCTGGATTCGATCGAGAGAAATGTGAGGTGAAGTTGGTTGGCACTCCATTGACACATAAAAGATTCCTTAGGAGGAATAGAGGGACTTA TGGACCGGCGATTGAAGCCGGTAAGGGCACATTTCCTGGACATTCAAGTCCCATATCACAGCTTTATTGCTGCGGGGACTCCACATTTCCTGGAATTGGA GTCCCTGCAGTTGCAGCTAGTGGTGCCATCGTTGCCAACTCCCTTGTTTCAGTGACTCAACACTCTCAGCTTCTCGACGCCATTGGAATCTAA
AA sequence Show only first row Show all	>Lus10037348 pacid=23152610 polypeptide=Lus10037348 locus=Lus10037348.g ID=Lus10037348.BGIv1.0 annot-version=v1.0 MAAAASVFAGYLQHCRSNSSLPSSFSRRASVLARSSSNGSPPSTNDKKSFLGLPSPQFGKAEADVVVIGSGIGGLCCAGLLARYGQDVVVLESHDQPGGA AHAFEVKGYKFDSGPSLFSGFQSRGVQANPLAQVLDALGESIPCVSYDSWMVYVPEGEFLSRIGPTEFYKDLEKHAGPNAVQEWKKLLDTILPLSAAAMA LPPLSIRGDLGVLSTAAARYAPSLLKSFGEIGPRGAFGATKLLRPFSEIVDSLELKDPFVRNWVDLLAFLLAGVKSSGILSAEMIYMFAEWYKPGCSLEY PLHGSGAIVDALVRGLEKFGGRLSLRNHVEKIVVENNRAIGVELRSGQTGKLDLHEVILGSKLSPLPSTFYPTFHLPNQTLTMPVITGNSFWWQFIRARK AVISNASMWDTTILLPREVLPKSYLERINSTPQCESFMHLHLGFDGWGLPDDLGIHHIVVNDWERGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPG TEPFELWKGLDRKSNEYKQLKEERSEVMWRAVERALGPGFDREKCEVKLVGTPLTHKRFLRRNRGTYGPAIEAGKGTFPGHSSPISQLYCCGDSTFPGIG VPAVAASGAIVANSLVSVTQHSQLLDAIGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	0	1
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	3.7	0.8759
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	5.1	0.8719
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10041406 [exp]	5.7	0.8556
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	8.1	0.8497
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	8.4	0.8384
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	11.7	0.8487
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	11.8	0.8454
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	12.2	0.8662
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	19.2	0.8441
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	23.0	0.8447

Compare expression of checked genes

Lus10037348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.