Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09840 667 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT1G57870 654 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT5G26751 552 / 0 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT3G05840 552 / 0 ATSK12 Protein kinase superfamily protein (.1.2) AT5G14640 551 / 0 ATSK13 shaggy-like kinase 13 (.1) AT4G00720 531 / 0 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT2G30980 519 / 0 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT4G18710 517 / 0 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT1G06390 516 / 0 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT3G61160 496 / 2e-175 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035771 [exp] 692 / 0 AT1G09840 642 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Lus10001519 [exp] 555 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 555 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10013088 [exp] 539 / 0 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 533 / 0 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 531 / 0 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10036568 [exp] 527 / 0 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 525 / 0 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10029240 [exp] 509 / 0 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225700 [exp] 723 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.003G005900 [exp] 714 / 0 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.014G115600 [exp] 557 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 555 / 0 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.005G005400 [exp] 554 / 0 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 549 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G075100 [exp] 546 / 0 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G155000 [exp] 533 / 0 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.004G059000 [exp] 511 / 0 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.011G068600 [exp] 505 / 9e-180 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037349 pacid=23152246 polypeptide=Lus10037349 locus=Lus10037349.g ID=Lus10037349.BGIv1.0 annot-version=v1.0 ATGGCGTCTGCTAGCCTTAGTAACGGAGGTGTTGGAAGCTCAAGGTCTATTAATGGGTTCAAGAGTTCATCAAGTTCTGTTGATTGGCTCGGAAGAGAGA TGCTTGAGATGCGATTAAGGGATAAGGTGGAGCATGATGATGATCAGGATAGTGACCTTGACATAATTGATGGTGTTGGTGCAGAAGCAGGACATGTCAT ACGAACCACTGTAGGTGGTCGAAATGGTCAATCTAGGCAGACAATAAATTATATAGCAGAACATGTGGTTGGAACTGGTTCGTTTGGTACAGTATTTCAA GCAAAATGTAGGGAAACTGGGGAGATCGTTGCTATTAAGAAAGTTCTGCAAGACAAACGCTACAAGAACAGGGAGTTACAGATAATGCAAATGCTGGATC ATCCGAATATTGTTGGTCTCAAGCATTCTTTCTTTTCAACTACTAACAAGGAAGAGCTATACCTGAATCTCGTGCTGGAATACGTTCCCGAGACTCTTAA TCGTATCGCAAGAAACTACAACAGGGTCAATCAGCGAATGCCCTTAATATACGTGAAGCTATACACATATCAGATCTGCAGGGCACTTGCCTTTATGCAC AATTGCGTCGGTATTTGTCATCGTGACATCAAGCCTCAGAATCTATTGGTGAAAGGAGAAGCCAATGTTTCTTACATCTGCTCGAGATACTACCGTGCCC CAGAACTGATATTCGGTGCCACCGAGTACACAACTGCAATCGATATATGGTCCACTGGTTGTGTGATGGCCGAATTGCTGCTTGGACAGCCGCTGTTTCC CGGTGAGAGTGGAGTTGATCAACTAGTTGAGATCATTAAGGTGCTAGGGACACCAACCAGGGAAGAGATAAAGTGCATGAATCCAAACTACACAGAGTTT AAGTTCCCACAGATAAAACCTCATCCATGGCACAAGGTCTTCCAGAAACGGTTACCACCAGAAGCAGTGGACCTGGTCTGCAGATTCTTTCAGTATTCTC CATATCTGCGATGCACCGCTCTGGAAGCTTGCATTCATCCTTTCTTTGATGAATTGAGAGATCCAAACACACGCCTTCCCAACGGGCGTCCTTTCCCTCC ATTGTTCAACTTCAAATCCCAAGAGTTGTCGGGAATCCCTACCGATATAGTGAACAAGCTAATCCCCGAGCATGCCCGTAAGCACAACTTATTTATGGCT CTGGACTCCTAA
AA sequence Show only first row Show all	>Lus10037349 pacid=23152246 polypeptide=Lus10037349 locus=Lus10037349.g ID=Lus10037349.BGIv1.0 annot-version=v1.0 MASASLSNGGVGSSRSINGFKSSSSSVDWLGREMLEMRLRDKVEHDDDQDSDLDIIDGVGAEAGHVIRTTVGGRNGQSRQTINYIAEHVVGTGSFGTVFQ AKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVGLKHSFFSTTNKEELYLNLVLEYVPETLNRIARNYNRVNQRMPLIYVKLYTYQICRALAFMH NCVGICHRDIKPQNLLVKGEANVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEF KFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPYLRCTALEACIHPFFDELRDPNTRLPNGRPFPPLFNFKSQELSGIPTDIVNKLIPEHARKHNLFMA LDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10037349 [exp]	0	1
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	5.8	0.7560
AT4G37810			unknown protein		Lus10011570 [exp]	8.5	0.7416
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	15.6	0.7209
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	19.6	0.7367
AT2G26470			unknown protein		Lus10038230 [exp]	29.7	0.7116
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	33.7	0.6468
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10036073 [exp]	45.3	0.6047
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	67.3	0.6335
AT1G12790			unknown protein		Lus10003529 [exp]	67.9	0.6284
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	78.9	0.5670

Compare expression of checked genes

Lus10037349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.