Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 115 / 6e-28 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 113 / 5e-27 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 111 / 3e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 108 / 3e-25 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 105 / 1e-24 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT4G05150 103 / 5e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 102 / 7e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 97 / 1e-23 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G04700 99 / 2e-22 PB1 domain-containing protein tyrosine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035772 [exp] 577 / 0 AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 122 / 5e-30 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 122 / 5e-30 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10035641 [exp] 105 / 2e-26 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10006977 [exp] 110 / 7e-26 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 108 / 1e-25 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 106 / 9e-25 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 103 / 1e-24 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 103 / 4e-24 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006200 [exp] 228 / 1e-72 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G224500 [exp] 224 / 3e-70 AT5G49920 185 / 3e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 122 / 6e-30 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 120 / 1e-29 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 117 / 2e-28 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G285800 [exp] 114 / 8e-28 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.018G095800 [exp] 114 / 2e-27 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.009G080200 [exp] 110 / 2e-26 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G123500 [exp] 111 / 3e-26 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 108 / 2e-25 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10037350 pacid=23152629 polypeptide=Lus10037350 locus=Lus10037350.g ID=Lus10037350.BGIv1.0 annot-version=v1.0 ATGAGTCAGGAACTCAGTGGGCCAACCGTTGCTAATCTGAAAATCGCAAACAACGAGGTTTCCTCTTCCGACGACTCGGTGTCCGCTTCGGCGGCTTCCT CTCCGACGAGCAGGGTGAAGTTCCTTTGCAGCCATGGCGGTAAGATTCTGCTTAGACCTCCTGACAGTCACCTTAAATACGTCGGCGGCGAGACCCGTGT CATTGCCGTTCCGCGAGATCTCCGCTTCTCAGACCTGATGAAGAAGCTAAAAGCAGAATTTGAAAGTGATGTGGTGCTCAAGTACCAGGTTGTACCTGAC AATCTAGACATATTGGTCTCCGTAAGGACTGATGAAGATCTGAAGCACATGCTGGAGGAATATGATCGCCATGAAAGTCAAGGAATAACCAAGTTTCGTG CTTTCTTGTTCCCTTCCAATCCGGCAATCCTCGAGGCTCAAACAACTTCCTCTGATCCTCACGCACCTGAACAACGTTACATCGAGGCTGTCAATGGTAC GTACCGCTCAGGAGCAGCCTACTCTTCGAGACATACCTCAACTTATGCAGGCCGCCCGACTTTCAGCATATCTGCTTGTAACTCTCCCAACTGTGGTTCT CCTGAAAGCAACCGCAGCGATGATACCATGTCTCCGGAGCATCGCAGTATGATGATGAACAACCCGCTTAGTACTGCTAAACATTCTATGTCCAGAGTGC GGAGTTCTCCGAGTCTTTGCAGTTTGAACAGTTACCAACAGCAAGGCAGCAGCAGCAGTAGCAACTTCAGCAATCACAATATTCACAGGCCTTATCCCCA TTACTACCAGCAACAGCCACAACAACTACAACTGCACCATCCCCACAGCTACCAACAACTACAACAACACAAACCGCCGTCCCATGATCCTCATAGGCTG TCCCCAGGCTTGCCATTTAGCCGGCATGAGATGGGAAGAATCCCTTCTCCTGTTCCTCATCATGGTCTGAATCAGCAGCAGTACTACTCAAGCAGACACA GCAACGTAGCAATGGGAGGAGCTGGGAACAAGTATGGGTACCAGGATGAATATACTTATTCACCTGTTTATAGGAACTTTGACAGAATGGACAGTCTTCG TTCTAGTAGCAGAATGGGAGTTGATATGAGCTAA
AA sequence Show only first row Show all	>Lus10037350 pacid=23152629 polypeptide=Lus10037350 locus=Lus10037350.g ID=Lus10037350.BGIv1.0 annot-version=v1.0 MSQELSGPTVANLKIANNEVSSSDDSVSASAASSPTSRVKFLCSHGGKILLRPPDSHLKYVGGETRVIAVPRDLRFSDLMKKLKAEFESDVVLKYQVVPD NLDILVSVRTDEDLKHMLEEYDRHESQGITKFRAFLFPSNPAILEAQTTSSDPHAPEQRYIEAVNGTYRSGAAYSSRHTSTYAGRPTFSISACNSPNCGS PESNRSDDTMSPEHRSMMMNNPLSTAKHSMSRVRSSPSLCSLNSYQQQGSSSSSNFSNHNIHRPYPHYYQQQPQQLQLHHPHSYQQLQQHKPPSHDPHRL SPGLPFSRHEMGRIPSPVPHHGLNQQQYYSSRHSNVAMGGAGNKYGYQDEYTYSPVYRNFDRMDSLRSSSRMGVDMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Lus10037350 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	3.5	0.7631
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	9.8	0.6172
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	13.6	0.7239
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	19.8	0.7510
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	27.3	0.7285
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	28.4	0.7146
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	28.4	0.7093
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	38.5	0.6799
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	43.0	0.6916
AT4G27020			unknown protein		Lus10032644 [exp]	44.8	0.6821

Compare expression of checked genes

Lus10037350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.