Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65810 516 / 7e-167 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G37150 491 / 1e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 457 / 1e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 459 / 1e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 439 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65780 448 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 430 / 4e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 332 / 2e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 200 / 2e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 192 / 1e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035774 [exp] 1459 / 0 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 1037 / 0 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035776 [exp] 800 / 0 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 201 / 2e-52 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 174 / 6e-44 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 172 / 2e-43 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10015030 [exp] 163 / 4e-41 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 159 / 8e-40 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 159 / 3e-39 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143450 [exp] 770 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 768 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 764 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 559 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077600 [exp] 490 / 6e-157 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 478 / 4e-152 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140601 [exp] 405 / 2e-123 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 404 / 3e-123 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 403 / 7e-123 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077100 [exp] 395 / 3e-121 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037353 pacid=23152374 polypeptide=Lus10037353 locus=Lus10037353.g ID=Lus10037353.BGIv1.0 annot-version=v1.0 ATGAATGATATTTTCAACCAACACCTCTTCCAGGTGGCAAAGATTCCTCAATCGGTTGAGTCAGTTGAGCAGTACTATAACCAGTTCAAGATTCCTTTGT TGGAAGAGACAAGAGCTGCACTTCACTCAGCTATGAAGGTCATCACTACAGCTCCATTCGCCCAGGTGACTGGATTCAAGGAGTGCAATCCAGAAGGATG TCTCTTGTATGATGTTGTTGTTGATTCATGGATGAACAGATTTGGTAGCTCTGCCAAGGAGCCTTACAAGCCATCCCCTGGGGATATTGTTATATTAGCA GCTGGTTCCAAACCTGAAACTGTTTCTGACTTGAAAAGGGGAAGCAGTTCTGGCTCATGGTGTTTTGCCAAGATTGGCTTTACTCCTGAAGATGATGATG ATCTTCAACCTTCAAATGCATCCCCGTTCTTCAAAATCCAATCAGCGTCAAAACAAGTGGAAGGTATTATGAGTGAATCCATCTCTCACGCCATCTTCTT GACAAATGTGTTCACTAATCAAATCATTTGGCACGGGTTACACAAGAATGGGAATGCCAGAATTGTCAATCAAGTTCTATCTGCAGAATCCATGGGAAAG GAAGACTGCAGTACTCATTGCTGTAAACAAATTGAAACAAAGCAAGCTCTGGGGACCAGTGATTCTTCCAACTTGAATGACTCTCAAACTGATGCCATCA TGGCTTGCCTTCGAAGAGTTCGCTGCCTGCATAATAGTTCCGGGTTAGAACTTATTTGGGGTCCTCCTGGGACTGGGAAAACCAAAACTCTCAGTACTTT GTTGGTTACTTTGTTGAGAATGGATTGCAGGACCTTGACTTGTACTCCAACCAATGTTGCTATCAAAGAAGTAGCTACCAGGGTTGTCAAGCTTGTGAAA CAAGCAACAGAACCATACCCGTCTCCGAATTTCGTTACTTCATTCTATCCGTTGGGGGATCTTCTATTGTTTGGCAACAAAGCTAGGCTTAAACTAGGCT CGGAAGTTGAGCAAATATTCTTGGATCATCGTGTGAAACAGCTGTCAAAGTGCTTTGGATCTAACTCTGGATGGAAGTACCACATCGATTCTATGATAAA CTTTCTTGAGCATTGTGCATCTCAGTTCCTTGTTGATCAAGAAAACAAGAAGAATGGCAAGCTGAAGAAGGGTAATGGACAAATGATCAAAGGGAAAAGG TGGAAAAGGAAAGATAATACTGCATGTCTTGAGTATGCTAGAAGTAGATTTCGTACGGCTTTGTTGGAACTTAAAGATTGCTTCGTTACTTTGTGGACTC ATGTTCCCCATGGTTACTTGGGAAGAGACGTCATTCATAAGTTGCAATGGCTTGTTCACTTGCTAAACTCTTTCGGAACTTTACTAAGCCAGGAAGGTGT GCAGTCTAATGAGCTAGAGCGGCTTTTCTCTTGCCCAAACATCTTAGAATCTTCTGGTGATGTGTACATTCAGTTGAGCCTTAAAAGAGCTGAGTGTTTA TGTGCTCTGAAAGATTTAAGCACAAGTCTTGGCCAACTTGATTTTCCCAGACCAGAATACTACGCCATAAGAAAGTTTTGCTTACAGAAGTCTGTGCTTG TTTTTTGCACCGTATGTAGCTCATATAGGCTGCATGCAAAGGGAATAGTTCCTTTCAAGGTATTGGTAATCGACGAAGCAGCACAACTGAAAGAGTGTGA ATCAGCATTGCCTCTACAACTCAATGGCCTCAATCACGTCATTCTCATAGGCGACGAATGCCAATTACCAGCTATGGTTCAAAGTAAGGCTTGTGCTGAA TCAGGGTTCGGAAGAAGCTTGTTTGAAAGGTTAACCTTATTAGGACATTCTAGGCACCTCTTGAATGTTCAGTACAGGATGCATCCATCAATCAGTTCCC TTCCAAATTCAATGTTCTACTTTGGGAAGATACAAGACGGATGCAACGTGAAGGAACCGAGTTACGAGAAATGCTACCTTCCAGGAGGTCCTATGTGTAG TCCCTATTCGTTTCTTAATGTGAAAGGCGGAAGTGAATTCTCGGATGATGTTGGACGTAGCAAGAAGAATATGGCTGAGGCTTCCATTGTGCTGAAATTG GTGCAGAATCTTCACAAAGGTTGTATCTTTTTATGCACAGCATGGAGTGTATCAAAAGAGAAGATTTCGATTGGAGTTATATCTCCATATGCCGCACAAG TCAGTGAAATTCAGCGTAAACTTGGTCGTAAATATGAAAGGACAGACGGATTCTCAGTTAAAGTTAGATCAGTCGATGGGTTCCAAGGTGGGGAGGAAGA TATCATAATCATATCCACAGTGAGATCCAACAGCAAAGGAGCAATTGGTTTTCTTTCCAATGGACAAAGAGCCAATGTTGCTCTTACAAGAGCCAGGCAT TGTCTGTGGGTTTTGGGGAATGAGAAAACCTTATTGAAGAGTGGATCGGTGTGGGAAAGAGTAGTGGTTGATGCTAAAGCCAGAAACTGTTTCTTCAATG TTACACTTGAAAGTTTTCGAAAGGCTGACGGCACTGGTCCAAAACAGAAGAGAAATAAAGAGGTTGATGATCAGCTTATCACAAAGTTTGATGTTGTTGA ACTTGAGCTCCCTGGTCATGTCTGCGGAAAGGCCAAAGGAGGAGTTGTTAAGAAAGATGGTTCTGATGAATATTCTGGAAAGGCTGCTTGCAGTACTGGT CAAAAAAAGAAGGGAAATGAAGAGGTTGATGAGCTTCGAACAAAGTTTGATATTCTTCAACTTGAGCTCCCTGATACCCGTGGAAAGGCCAAAGGACACG CTGGAAAGGTGGATCTTGTTTCAGACAAGAATGGGAATGAACAGGAAGTTGATGGTATGATGAGGAGAAAGTATGATGATGGTGGTAATCAAAAGGTCAA TAAGCATGGTGCCAGGCTTACATTGGTTTGTGTGCTTATCGTGACTGCTGTGTCTGCTGTAAGTAGTGCCTGCATTTGGTTCTTCTAG
AA sequence Show only first row Show all	>Lus10037353 pacid=23152374 polypeptide=Lus10037353 locus=Lus10037353.g ID=Lus10037353.BGIv1.0 annot-version=v1.0 MNDIFNQHLFQVAKIPQSVESVEQYYNQFKIPLLEETRAALHSAMKVITTAPFAQVTGFKECNPEGCLLYDVVVDSWMNRFGSSAKEPYKPSPGDIVILA AGSKPETVSDLKRGSSSGSWCFAKIGFTPEDDDDLQPSNASPFFKIQSASKQVEGIMSESISHAIFLTNVFTNQIIWHGLHKNGNARIVNQVLSAESMGK EDCSTHCCKQIETKQALGTSDSSNLNDSQTDAIMACLRRVRCLHNSSGLELIWGPPGTGKTKTLSTLLVTLLRMDCRTLTCTPTNVAIKEVATRVVKLVK QATEPYPSPNFVTSFYPLGDLLLFGNKARLKLGSEVEQIFLDHRVKQLSKCFGSNSGWKYHIDSMINFLEHCASQFLVDQENKKNGKLKKGNGQMIKGKR WKRKDNTACLEYARSRFRTALLELKDCFVTLWTHVPHGYLGRDVIHKLQWLVHLLNSFGTLLSQEGVQSNELERLFSCPNILESSGDVYIQLSLKRAECL CALKDLSTSLGQLDFPRPEYYAIRKFCLQKSVLVFCTVCSSYRLHAKGIVPFKVLVIDEAAQLKECESALPLQLNGLNHVILIGDECQLPAMVQSKACAE SGFGRSLFERLTLLGHSRHLLNVQYRMHPSISSLPNSMFYFGKIQDGCNVKEPSYEKCYLPGGPMCSPYSFLNVKGGSEFSDDVGRSKKNMAEASIVLKL VQNLHKGCIFLCTAWSVSKEKISIGVISPYAAQVSEIQRKLGRKYERTDGFSVKVRSVDGFQGGEEDIIIISTVRSNSKGAIGFLSNGQRANVALTRARH CLWVLGNEKTLLKSGSVWERVVVDAKARNCFFNVTLESFRKADGTGPKQKRNKEVDDQLITKFDVVELELPGHVCGKAKGGVVKKDGSDEYSGKAACSTG QKKKGNEEVDELRTKFDILQLELPDTRGKAKGHAGKVDLVSDKNGNEQEVDGMMRRKYDDGGNQKVNKHGARLTLVCVLIVTAVSAVSSACIWFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65810			P-loop containing nucleoside t...		Lus10037353 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	2.0	0.8761
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	4.9	0.8689
					Lus10012544 [exp]	5.7	0.8695
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	9.5	0.8459
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	11.0	0.8405
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	15.8	0.8457
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	16.0	0.8316
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	16.3	0.8567
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	16.5	0.8500
AT5G64010			unknown protein		Lus10036635 [exp]	17.3	0.8176

Compare expression of checked genes

Lus10037353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.