Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26570 716 / 0 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT4G33390 610 / 0 Plant protein of unknown function (DUF827) (.1) AT5G42880 456 / 2e-147 Plant protein of unknown function (DUF827) (.1) AT1G45545 430 / 2e-137 Plant protein of unknown function (DUF827) (.1) AT2G38370 71 / 3e-12 Plant protein of unknown function (DUF827) (.1) AT4G17210 58 / 2e-08 Plant protein of unknown function (DUF827) (.1) AT1G12150 50 / 6e-06 Plant protein of unknown function (DUF827) (.1) AT5G55860 47 / 7e-05 Plant protein of unknown function (DUF827) (.1) AT3G51720 46 / 0.0001 Plant protein of unknown function (DUF827) (.1) AT2G40480 46 / 0.0002 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035778 [exp] 1613 / 0 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 90 / 4e-18 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 87 / 6e-17 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 58 / 4e-08 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10038751 [exp] 57 / 6e-08 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 57 / 6e-08 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10039107 [exp] 54 / 5e-07 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1) Lus10034211 [exp] 47 / 8e-05 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029800 [exp] 842 / 0 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 838 / 0 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 88 / 1e-17 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 75 / 1e-13 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.019G049201 [exp] 55 / 2e-07 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.004G095800 [exp] 55 / 3e-07 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.016G005200 [exp] 49 / 2e-05 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 44 / 0.0005 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.006G004100 [exp] 44 / 0.0007 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10037354 pacid=23152257 polypeptide=Lus10037354 locus=Lus10037354.g ID=Lus10037354.BGIv1.0 annot-version=v1.0 ATGGAGGATGTAAAAGTGGATCAAGTTACACCTCCCGCTCCTGTGGAAGCTCCTCCACCACCCTCCCAGAATAATGGACTTCCTCCTGATGATACATCTT CAGGCCCTCTTACTAATGGCAAAACAGAGAACAGTGGTTTCCCTTCTGATGTAGACAAACCTGGAGCATCAGGCGTGCAAGATGTTTCCCCAAGCCAGGT TTCTTCTGTCAAAGATACACTTCCTTTAAATTTAGGTTTAGATGAATCTCAGTTGGCACCCAAGACAAGCTCTCCACTTTTAGAGGATAATAAAAAAGAT TCAGGTTCTGAAGCAGTTGGAAGTTCGTCCAATGGGCCTCAAACTCAATTGGACAGTAAAGCAGCTGTGGGAAATCCATTGAGTGGGGCTCCTGTGACTG AAACCTTGTCTTTGTCGTCTCCAGATGGAAAGCAAAATCCAAACGGTGCTGAACTCAATCAGAACTCTTCTGTTGCTTCAGAAGCAGTAGATACGACTAG TTTGACTCATATTCCTCTTATTCAGATGGATGATACTGCTTTAAAGCTCATTCCTAGTTCTACTAAAGTTCAGAAATCTGAAGTTGCTGGTTCGGTTGGG AGTCCTCTTGTTGAGATAATGGAAACTCCCCTGGCCCAGGATCCCTTTGATGCCCAGAATGCGCTTCTTCAGACTGATGACATTGTACTAGTCCCTTCTG CTCAGAAGGCATTCATAGATTCTCAGGAAAATGATGAGACAGTACAGAAACCGTCTGCTGCTCAGCCATCTGAAGGTACCACTTCAGTAGGCAGTCAATC CAGTCATGTAGATGATAGCACTGTACCGGCTGCTTCCTCTCCTAAACAAAAGGCGGAAGCCAATGAACTTTCTCTGCCTCCTGTAAAGATCAGGCTGGAG TCCCATCTTCCCGGTTCACCACGAGCTAGGATTATAAACCCTGCTGCCACTAGAACACCTAAATCTGGCGATTCAACTAAACTTCCCAAGCCGTCTGACT TGAACAGGGGAATCATCGATACAGCAGCACCTTTTGAATCTGTTAAACAAGCTGTTTCGAAGTTCGGGGGAATTGTTGATTGGAAAGCACATAGAATGCA AACGGTAGAGAGACGCAAGCTTGTAGAGCAAGAACTAGACAAGTTACAGGATGAGATGCCTGAGTACAGGAAGAGGTCAGAAGCTGCAGAAGAAGCTAAG ACTAAAGTAATCAAGGAGCTGGACAGTGCTAAGAGGCTTATTGAAGAGCTTAAACTCAATCTTGAGAGGGCACAAACAGAAGAGCATCAGGCAAAACAGG ACTCTGAGCTTGCCAAGCTTCGAGTCGAAGAGTTGGAACAGGGAATTGCTGATGAGGCTAGTGTTGCAGCCAAGGCGCAACTCGAGGTTGCTAAATCAAG ATATGCAGCAGCAGTTTCAGAACTGAAGTCCGTCAATGAAGAGTTGGAAGCTTTGCGCAAGGAATATGCTTCTTTGGTCAATGAGAAAGAAGAAGCCACG AAGAAAGCTGACGAGGCTGTATCTGCATCCAAGGAAGTTGAGAAGACAGTCGAGGAGCTCACTATTGAGCTAATTGCAACAAAGGAATCTTTGGAATCTG CTCATGCTGCTCATATGGAGGCAGAGGAGCATAGAATAGGAGCAGCCATGGCCAGGGAGCAGGATGCGCTTTATTGGGAGAAGGAGTTGAAAAAGGCAGA GGAGGAGCTCCAGAAACTTAACCAACAGATTCTTTCAGCAAAAGATCTCAAATCAAAACACGATGCTGCTTCTGCTTTGCTTGTTGATCTGAAGGCTGAA TTGGCAGCTTACATGGAGTCTAAGTTAAAAGAAGAAAGTACCAAAGAAGGTAACGGAACTATGCAAGAGAAGAAAAATCATACTGACATTCAAGCGGCAG TTGCTTCGGCTAAGAAGGAACTTGAAGAAGTGATGCTCAACATTGAGAGAGCAAATGCAGAAGTGAACTGTTTAAAGGTGGCTGCCGCCTCATTACAGGT AGAGCTTGAAAAGGAAAAATCTAATCTTGTCACGATCAGACAGAGAGAAGGAATGGCATCAGTTGCGGTTGCTTCTCTTGAAGCCGACATAGACAGGACC AAGTCCGAGATAGCGCTTGTTCAAATGAAGGAGAAAGAAGCACGGGAGAAAATGGTGGAAATCCCAAAGCAACTGCAGCAAGCTGCACATGCAGCCGATG AAGCGAAATTACTTGCTCAACAGGCTCGTGAGGATCTTCGAAAGGCAAAAGAAGAGGCGGAACAAGCACAGGCTGGGGCAAGTACTATGGAAAGCAGATT GCTAGCAGCTCAAAGGGAGATCGAGGCTGCAAAGGCTTCTGAAAAGCTGGCATTGGATGCCATTAGAGCCTTGCAAGAAAGTGAATCAGCTCAAACTGGA GGAGATGCAGATTCCGCGAATGGGGTAATACTTTCCCTTGAGGAGTACTATGAACTCAGCAAACAAGCTCACGAGGCAGAGGAGCAAGCTAACGAGAAGG TGGCAACAGCTATTGCTCAGATTGAGTTAGCCAAGGATTCCGAGTCCAAAACTTCAAAGAAGTTGGAAGAGGTGAACAAAGAGCTAGCTGCTAGGAAGGA AGCTCTAAGTGTTGCGATGGACAAGGCCGAGACTGCCAAGGAAGGGAAGTTGGGTGCAGAACAAGAACTGAGAAAATGGAGGTCTGAAAATGAGCAAAAA CGAAAGGCTGGTGAATCTGCTCATGGGGGTTCAAACAACACTAAGAGCCCTAGAGGGAGCTTCGAAGGGAGCAAAGAACCAACGACTGGTGCTGAGTACA ATATGTCTAAGCAAGAGACCCCTGCAAGCCCCAAGGTGGAAAGTAACACCGAGTCTGAGCCCTCGCCGGATGTGAAGTCGACAAAGAAGAAGAAGAAATC AATGTTCCCACGATTCCTCATGTTTCTTACAAGGAGAAAGTCGCATTCTTCCAAGTAA
AA sequence Show only first row Show all	>Lus10037354 pacid=23152257 polypeptide=Lus10037354 locus=Lus10037354.g ID=Lus10037354.BGIv1.0 annot-version=v1.0 MEDVKVDQVTPPAPVEAPPPPSQNNGLPPDDTSSGPLTNGKTENSGFPSDVDKPGASGVQDVSPSQVSSVKDTLPLNLGLDESQLAPKTSSPLLEDNKKD SGSEAVGSSSNGPQTQLDSKAAVGNPLSGAPVTETLSLSSPDGKQNPNGAELNQNSSVASEAVDTTSLTHIPLIQMDDTALKLIPSSTKVQKSEVAGSVG SPLVEIMETPLAQDPFDAQNALLQTDDIVLVPSAQKAFIDSQENDETVQKPSAAQPSEGTTSVGSQSSHVDDSTVPAASSPKQKAEANELSLPPVKIRLE SHLPGSPRARIINPAATRTPKSGDSTKLPKPSDLNRGIIDTAAPFESVKQAVSKFGGIVDWKAHRMQTVERRKLVEQELDKLQDEMPEYRKRSEAAEEAK TKVIKELDSAKRLIEELKLNLERAQTEEHQAKQDSELAKLRVEELEQGIADEASVAAKAQLEVAKSRYAAAVSELKSVNEELEALRKEYASLVNEKEEAT KKADEAVSASKEVEKTVEELTIELIATKESLESAHAAHMEAEEHRIGAAMAREQDALYWEKELKKAEEELQKLNQQILSAKDLKSKHDAASALLVDLKAE LAAYMESKLKEESTKEGNGTMQEKKNHTDIQAAVASAKKELEEVMLNIERANAEVNCLKVAAASLQVELEKEKSNLVTIRQREGMASVAVASLEADIDRT KSEIALVQMKEKEAREKMVEIPKQLQQAAHAADEAKLLAQQAREDLRKAKEEAEQAQAGASTMESRLLAAQREIEAAKASEKLALDAIRALQESESAQTG GDADSANGVILSLEEYYELSKQAHEAEEQANEKVATAIAQIELAKDSESKTSKKLEEVNKELAARKEALSVAMDKAETAKEGKLGAEQELRKWRSENEQK RKAGESAHGGSNNTKSPRGSFEGSKEPTTGAEYNMSKQETPASPKVESNTESEPSPDVKSTKKKKKSMFPRFLMFLTRRKSHSSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	0	1
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	1.0	0.9364
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	3.2	0.8195
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	5.5	0.7872
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	6.3	0.7815
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	8.0	0.7997
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	8.9	0.7980
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	11.0	0.8044
AT1G24330			ARM repeat superfamily protein...		Lus10011370 [exp]	13.4	0.7618
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	16.9	0.7125
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	16.9	0.7661

Compare expression of checked genes

Lus10037354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.