Plant FIBer expression Database

Lus10037355 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G36980 204 / 4e-69 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035779
[exp]
223 / 1e-76 AT1G36980 242 / 3e-84 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G089300
[exp]
214 / 7e-73 AT1G36980 242 / 4e-84 unknown protein
Potri.005G171901
[exp]
202 / 4e-68 AT1G36980 179 / 2e-59 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05255 UPF0220 Uncharacterised protein family (UPF0220)
Representative CDS sequence
>Lus10037355 pacid=23152243 polypeptide=Lus10037355 locus=Lus10037355.g ID=Lus10037355.BGIv1.0 annot-version=v1.0
ATGGATTTGTTGGAGATGTGGGCAATCTTCGGGCCAGGGGTGGCAGGTGCTGTCTTTGGAGCTGGCTGGTGGTTTTGGGTTGATGCTGTAGTTTGTAGCT
CGGTTCAAGTATCTTTTGTTCATTACCTTCCTGGTATCTTTGCATCATTTGCGGCCCTGATGTTTAACTGTGTTAGAAAAGAGGATATCGATTACTCTCC
CTACGACGAAGGTGAATGGAGACTGAAGCTGTGGTTATTCTTTGCATACGTTGTTTCCTTTGTTTCGCTAGCAGCGTCAGTGGGTTTGTTGATACAAGAT
TCCATTGTCAAGGACGGGCCTTCAGTATGGACAGGAACAGCAAGTGTTTTGCAGTGTGTCTTTGTCCTGATAAGTGGGTTGATCTACTGGACATCACATT
CGGAATGA
AA sequence
>Lus10037355 pacid=23152243 polypeptide=Lus10037355 locus=Lus10037355.g ID=Lus10037355.BGIv1.0 annot-version=v1.0
MDLLEMWAIFGPGVAGAVFGAGWWFWVDAVVCSSVQVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYDEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
SIVKDGPSVWTGTASVLQCVFVLISGLIYWTSHSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G36980 unknown protein Lus10037355
[exp]
0 1
AT2G19830 VPS32, SNF7.2 SNF7 family protein (.1) Lus10012921
[exp]
1.7 0.9158
AT1G36980 unknown protein Lus10035779
[exp]
2.4 0.9038
AT5G63910 FCLY farnesylcysteine lyase (.1) Lus10010948
[exp]
3.7 0.8845
AT2G19830 VPS32, SNF7.2 SNF7 family protein (.1) Lus10032705
[exp]
4.0 0.9115
AT3G08890 Protein of unknown function, D... Lus10012232
[exp]
5.7 0.8957
AT2G42590 GENERALREGULATO... general regulatory factor 9 (.... Lus10020705
[exp]
5.9 0.8489
AT3G11150 2-oxoglutarate (2OG) and Fe(II... Lus10028972
[exp]
6.0 0.8882
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Lus10022199
[exp]
6.3 0.8793
AT3G07560 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY... Lus10016082
[exp]
7.7 0.8763
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10021943
[exp]
9.2 0.8432

Lus10037355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.