Plant FIBer expression Database

Lus10037356 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15352 78 / 6e-21 ATCOX17 ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, cytochrome c oxidase 17 (.1)
AT1G53030 71 / 4e-18 Cytochrome C oxidase copper chaperone (COX17) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035780
[exp]
94 / 3e-27 AT3G15352 103 / 5e-31 ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, cytochrome c oxidase 17 (.1)
Lus10018872
[exp]
75 / 1e-19 AT3G15352 94 / 3e-27 ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, cytochrome c oxidase 17 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G400000
[exp]
83 / 2e-22 AT3G15352 102 / 6e-30 ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, cytochrome c oxidase 17 (.1)
Potri.011G119000
[exp]
79 / 2e-21 AT3G15352 97 / 2e-28 ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, cytochrome c oxidase 17 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0351 CHCH PF05051 COX17 Cytochrome C oxidase copper chaperone (COX17)
Representative CDS sequence
>Lus10037356 pacid=23152596 polypeptide=Lus10037356 locus=Lus10037356.g ID=Lus10037356.BGIv1.0 annot-version=v1.0
ATGGGTGGGCTGGCTTTGCAGAACTCTGCCCCTGCCTCAGGTTCGTCAGGGTCACAGCATGGGGTTGAACGAGCGGCCGCGAAGCCAAAGAAGAAGATCT
GTTGTGCTTGCCCTGATACAAAGAAGCTGCGAGACGAATGCATAGTGGAGCACGGTGAATCTGCCTGTGCAAAATGGATAGAGGCGCATCGTGTTTGCCT
CCGGGCAGAGGGATTCAATGTTTGA
AA sequence
>Lus10037356 pacid=23152596 polypeptide=Lus10037356 locus=Lus10037356.g ID=Lus10037356.BGIv1.0 annot-version=v1.0
MGGLALQNSAPASGSSGSQHGVERAAAKPKKKICCACPDTKKLRDECIVEHGESACAKWIEAHRVCLRAEGFNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15352 ATCOX17 ARABIDOPSIS THALIANA CYTOCHROM... Lus10037356
[exp]
0 1
AT4G05440 EDA35 embryo sac development arrest ... Lus10027955
[exp]
3.6 0.9136
AT1G09220 Pentatricopeptide repeat (PPR)... Lus10003133
[exp]
3.9 0.8938
AT2G37480 unknown protein Lus10023755
[exp]
6.6 0.9048
AT3G22845 emp24/gp25L/p24 family/GOLD fa... Lus10039381
[exp]
6.7 0.9107
AT5G15730 CRLK2, AtCRLK2 calcium/calmodulin-regulated r... Lus10008540
[exp]
7.7 0.9043
AT1G25682 Family of unknown function (DU... Lus10034268
[exp]
8.5 0.8773
AT3G21865 PEX22 peroxin 22 (.1) Lus10015100
[exp]
8.7 0.9108
AT1G56423 unknown protein Lus10020695
[exp]
12.5 0.8764
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Lus10041075
[exp]
13.0 0.8950
AT1G64385 unknown protein Lus10032376
[exp]
14.1 0.9018

Lus10037356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.