Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24280 1130 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 1124 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G09590 649 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 624 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G28540 527 / 2e-179 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 526 / 7e-179 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 509 / 1e-172 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 507 / 1e-171 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 503 / 2e-170 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 497 / 4e-168 HSP70B heat shock protein 70B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035781 [exp] 1244 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10017566 [exp] 1152 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10039044 [exp] 1149 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10010496 [exp] 1119 / 0 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10027341 [exp] 988 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10009039 [exp] 659 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 656 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 653 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 618 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224400 [exp] 1147 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.003G006300 [exp] 1144 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.009G079700 [exp] 667 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 562 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G087500 [exp] 529 / 3e-180 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 528 / 6e-180 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 521 / 2e-177 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.012G017600 [exp] 518 / 1e-175 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G205700 [exp] 505 / 4e-171 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042700 [exp] 505 / 5e-171 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10037357 pacid=23152372 polypeptide=Lus10037357 locus=Lus10037357.g ID=Lus10037357.BGIv1.0 annot-version=v1.0 ATGGCTACTTCAGCAGCTCAGATCAATGTACTCGGCGGGATGGGATTCGGGTCCTCTCCATCCAGAAGACCCACTTCCTCTTCCGCCCCAAAGTCCGTGT TCCTGGGCCACAACTCCAAAACGGCGGCGTTTCTGAGGTACAAGGGTGGCCCGGCGAGAAGGTACAGTGCCGGACCGGTGAGGATTGCGTGCGAGAAAGT GGTGGGGATTGATTTGGGGACGACGAATTCCGCTGTGGCGGCGATGGAAGGAGGGAAGCCGACGATCGTCACCAACGCCGAAGGTCAGAGGACGACGCCG TCAGTGGTTGCCTACACCAAAAACGGCGATAGACTGGTCGGGCAGATTGCGAAACGGCAGGCGGTGGTCAATCCCGAGAACACTTTCTTCTCGGTGAAGA GGTTCATCGGGAGGAAGATGTCGGAGGTCGACGAGGAGTCCAAACAGGTTTCGTACAAGGTGGTGAGGGATGAAAATGGGAATGTGAAGCTTGATTGTCC TGTTTTGGCCAAACAGTTTGCTGCTGAGGAGATTTCAGCTCAGGTTCTAAGGAAGCTTGTGGATGACGCGTCAAAGTTTTTGAATGATAAGGTGACCAAA GCTGTTGTGACTGTACCTGCTTACTTCAATGACTCCCAAAGGACAGCAACGAAAGACGCTGGTAGAATTGCAGGGCTGGAAGTTCTAAGAATCATCAATG AACCAACTGCTGCTTCTTTGGCTTACGGGTTTGAAAAGAAGAATAATGAGACCATTCTTGTGTTTGACCTTGGTGGTGGTACTTTTGATGTTTCAGTGCT TGAGGTCGGTGATGGTGTTTTCGAGGTGCTCTCTACATCAGGAGATACACATTTGGGAGGAGATGATTTTGACAAGAGAATTGTTGATTGGCTAGCCTCT GATTTCAAAAGGAATGAAGGTATCGATCTATTGAAGGACAAGCAAGCTCTTCAAAGGCTAACTGAAACAGCTGAGAAAGCCAAAATGGAGCTTTCAACTT TAACGCAGACTAATATAAGTTTGCCTTTCATCACTGCCACTGCTGATGGGCCTAAGCACATTGAGACAACCCTTACAAGGGCCAAGTTCGAAGAACTCTG CTCTGATCTCCTTGACAGGGTTAAAACTCCAGTTGAGAATGCATTAAAGGATGCAAACCTTGCCTTCAAAGACCTCGATGAAGTGATTCTTGTGGGTGGG TCAACTCGTATCCCTGCGGTGCAGGAGCTAGTGAAGAAGTTGACAGGGAAAGAACCCAATGTGACTGTAAACCCTGATGAGGTTGTTGCGCTGGGTGCTG CTGTTCAGGCTGGTGTTTTGGCTGGAGATGTGAGTGACATTGTGTTGTTGGATGTAACGCCATTGTCTCTGGGACTTGAAACACTGGGAGGAGTGATGAC AAAGATCATTCCAAGAAATACGACGCTGCCTACATCGAAATCAGAGGTGTTCTCTACTGCAGCGGACGGTCAGACCAGCGTGGAAATCAACGTGCTTCAA GGGGAGAGAGAGTTTGTTAGGGACAACAAATCTCTTGGAAGCTTCCGCTTGGACGGTATCCCACCGGCACCGCGTGGTGTGCCTCAGATCGAGGTTAAAT TCGACATCGATGCCAACGGTATTCTCTCTGTTGCGGCTGTCGATAAGGGCACCGGCAAAAAGCAAGACATTACCATCACCGGTGCTAGCACATTACCAAG CGATGAGGTGGATAAGATGGTGAAGGAGGCAGAGAGATTCGCCAAGGAGGACAAAGAGAAGAGAGATGCGATTGACACGAAGAACCAGGCGGATTCGGTC GTGTATCAGACGGAGAAGCAACTCAAGGAGCTGGGAGAGAAAGTGCCGGCCCCGGTGAAAGAGAAGGTGGAGTCGAAACTCCAGGAGCTGAAGGATGCCA TTGCTGGTGGGGAGACGCAAACAATTAAAGATGCAATGGCTGCACTGAACCAGGAAGTGATGCAGCTGGGGCAATCACTCTATAACCAACCAGACGCAGC AGCAGGAGCAGCAGCTGGTGGCGGTGCGAGTCCTGGGGCTGGTGCCGAGTCCGGACCTGCATCTGGCTCGTCTCCTTCCGATGGAGCAGAAGGAGACGTG ATTGATGCAGATTTCACGGACAGCAACTGA
AA sequence Show only first row Show all	>Lus10037357 pacid=23152372 polypeptide=Lus10037357 locus=Lus10037357.g ID=Lus10037357.BGIv1.0 annot-version=v1.0 MATSAAQINVLGGMGFGSSPSRRPTSSSAPKSVFLGHNSKTAAFLRYKGGPARRYSAGPVRIACEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTP SVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYKVVRDENGNVKLDCPVLAKQFAAEEISAQVLRKLVDDASKFLNDKVTK AVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS DFKRNEGIDLLKDKQALQRLTETAEKAKMELSTLTQTNISLPFITATADGPKHIETTLTRAKFEELCSDLLDRVKTPVENALKDANLAFKDLDEVILVGG STRIPAVQELVKKLTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQ GEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTGKKQDITITGASTLPSDEVDKMVKEAERFAKEDKEKRDAIDTKNQADSV VYQTEKQLKELGEKVPAPVKEKVESKLQELKDAIAGGETQTIKDAMAALNQEVMQLGQSLYNQPDAAAGAAAGGGASPGAGAESGPASGSSPSDGAEGDV IDADFTDSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	0	1
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	1.4	0.9882
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	2.0	0.9831
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	2.4	0.9797
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	3.6	0.9505
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	4.0	0.9634
AT3G10020			unknown protein		Lus10003372 [exp]	4.2	0.9673
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	4.7	0.9561
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	4.9	0.9722
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	5.5	0.9686
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10042947 [exp]	6.0	0.9104

Compare expression of checked genes

Lus10037357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.