Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49670 984 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 982 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 953 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 853 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 642 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 607 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 601 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 572 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 556 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 553 / 0 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035783 [exp] 1463 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 1043 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 1010 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 1007 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 947 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 821 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 809 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038930 [exp] 642 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 632 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223900 [exp] 1417 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 1098 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 1082 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 1003 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 835 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 831 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 656 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 647 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 646 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 643 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037358 pacid=23152276 polypeptide=Lus10037358 locus=Lus10037358.g ID=Lus10037358.BGIv1.0 annot-version=v1.0 ATGGTCATGGTCCCTTTCATTATCCTCCTCATCACCACCTTAGTCTCCAGTACTATCACTTCCACTTGCTATGCTTCCCTTGTCAATGATTTCCATACCT TGCTCACTCTTAAACAAGGCTTTCAGTTCCCTCAACGGGCCTTGGCATCCTGGAGCGCCTCCAATCAGACCTCATTCTGCTCTTCTTGGCCTGGAGTTCA CTGCTCCAGAGGCAGGGTCGTTACTTTGGACTTGACGGATTTCAATCTTTATGGCTCCATCTCACCTCCTCACATTCTTTCCAGGCTCGACCAGCTTGTA ACCCTGTCCCTGTCCGGAAACAATTTCACGGGCACCATTTATATTTCTAGCCTCACCAATCTGAAGTTTATCAATATATCAAACAACCAATTCAGTGACG GTCTGGATTGGGACTTCTCATCCCTGCCAAGCTTGCAAGTCCTTGATGCCTATAACAACAACTTCACATCCTTTCTTCCTCTTGGGATTCTGACTCTGAG GAACAATCTCAGATACTTGGATCTTGGTGGGAACTATTTCTACGGAAAAATCCCAGCAAGCTATGGAGAGCTTCAAGGATTGCAGTATCTTTCCCTGGCG GGAAATGACCTTCATGGCAGAATTCCAGGTGAATTGGGGAACCTCACCAACTTAAGAGAGATATATTTGGGGTATTACAATGGTTTTGAAGGTGGGATTC CATTGCAGCTTGGTAACCTGGTGAATCTCGTCCACATGGACATTTCCAGTTGCGAGTTGGACGGTCAGATTCCATGGCAGCTTGGGAACTTGAAGCAACT CGATACCCTCTACTTGCATGCCAATATGCTCTCAGGTTTCATCCCAAAGGAGCTTGGCAACTTGACCAACTTGGTCAACCTTGATCTCTCCATCAATGCA CTCACTGGCGAAATCCCAGTCGAGTTCATCAATCTCCAGCAACTCAGGCTCTTCAATTTGTTCATGAACAAGCTGCACGGCTCGATTCCTGATTACATTG CGGAGCTGCCTAACTTGGATACATTGGGACTGTGGATGAACAACTTCACTGGTGTCATCCCCAGAAAACTTGGCCAGAATGAGAAGCTCCAGAGTCTTGA TTTGTCATCAAACAAGCTCACTGGCACTATCCCTCCTGACCTGTGCTCATCCAACCAGCTGAGGATTCTGATTCTTTTCAAGAACTTCCTTTTCGGGCCG ATTCCGGACGGCTTAGGAACCTGCTACAGCTTGACTAGAGTGAGGCTGGGCCAGAATTACTTGAATGGCAGCATTCCAAATGGTCTCATTTACTTGCCAC TGCTCAACTTAGCCGAGTTTCAGAACAACTACCTATCAGGAGTACTGTCTGAGAACGGCTACAGCTCGTCCAAACCGGACAAATTAGGCCAATTGGATCT CTCAAACAATCTCCTTTCAGGTCCATTGCCATCCTCACTTTCAAACTTCTCTTCTCTGCAAATGCTCCTCCTCGGTCGCAACAACTTCTCCGGATCAATT CCATCCACCATTGGCGAACTCCACCAAGTCCTGAAGCTAGAACTAAGCTCCAATTCGCTCTCTGGTCCAATCCCTCCTGAAATTGGCAACTGCAGCCATC TAGCCTTCCTTGACTTCAGCCAGAACAATCTCTCTGGTCCAATTCCACCAGAAATCTCCAACATCCACATCCTAAATTACCTAAACCTATCAAGAAACCA TCTCAACCAAACAATCCCGAAATCCATCGGCACAATGAAATCCTTGACGATCGCGGATTTCTCCTTCAACCAATTCTCCGGGAAGCTCCCCGATTCGGGC CAATTCTCGGTATTCAACGCCTCCTCCTTCGCCGGAAACCCTAAACTCTGCAGCAACATTCTAAACAACCCTTGCAATCTCACAACAAACACAGACGAGC CTACAAAATCGCCAGACAATTTCAAGCTAATCTTCGCCCTAGGGCTCCTCATCTGTTCCCTGGTGTTCGCCACGGCGGCGATAGTCAAGGCGAGGTCGTT CAAGCGTTCGGGTGGGTCTGAGAAGCCGTGGAAGATGACGTCATTTCAGAAGTCGACGGAGTTCGCCGTCGCGGACATCCTCGAGTGCGTCAAGGACGGG AACGTGATCGGTAGGGGAGGCGCGGGGATCGTGTACCATGGGAAGATGCCGAGCGGGTGCGAAGTAGCGGTGAAGAAGCTGCTCGGGTTCGGACCTCCGA ACGGGCACGACCACGGGTTCCGGGCAGAGATCCAAACCCTAGGGAACATCCGGCACCGGAATATAGTAAAACTGGTGGCGTTCTGCTCCAACGGGGAGAC GAACCTGCTAGTGTACGAGTACATGAAGAACGGCAGCCTAGGAGAGGCGCTCCACGGAAGAAAAGGCGCTGCCGGGGGTACTGGTTTCCAACTAGGGTGG GGTCTCCGGTACAAGATCGCGGTGGAGGCGGCGAAGGGAATGTGTTACCTGCACCATGATTGCTCGCCGTTGATCGTACACCGTGATGTGAAGTCAAACA ACATTCTGTTGGATTCTGGGTTTGAGGCCCACGTGGCGGATTTTGGGCTGGCCAAGTTCCTGGTTGACGAGTGTATGTCCGCTATTGCCGGCTCTTACGG CTACATTGCCCCTGAGTATGCGTATACATTACGAGTGGACGAGAAGAGCGATGTCTATAGTTTTGGGGTCGTGTTGCTTGAGCTCCTTACGGGGCGGAGA CCCGTGGGAGATTTCGGGGAAGGCGTGGATATAGTGCAGTGGACCAGAAAGGTGACGAGCCAACGTAGGGAAGAGGTGATGAGCATCATTGACCGACGGT TGACGATGGTGCCCAAAGAGGAGGCGATGCATTTGTTCTTCGTTGCTATGTTGTGCAGCCAAGAGAACAGCATCGAACGGCCGACGATGAGAGAAGTTGT GCAAATGTTGTCGGAATATCCTCATCATTTGACCGCTTCTCAACCTCTTCCTTCTTCTTCCGTTATCGCTCCACAAGTACTAAAAAGTGCTGGAGGAGAA AGGAATAACTCAATATTGAAACAACAAAATGTGTAG
AA sequence Show only first row Show all	>Lus10037358 pacid=23152276 polypeptide=Lus10037358 locus=Lus10037358.g ID=Lus10037358.BGIv1.0 annot-version=v1.0 MVMVPFIILLITTLVSSTITSTCYASLVNDFHTLLTLKQGFQFPQRALASWSASNQTSFCSSWPGVHCSRGRVVTLDLTDFNLYGSISPPHILSRLDQLV TLSLSGNNFTGTIYISSLTNLKFINISNNQFSDGLDWDFSSLPSLQVLDAYNNNFTSFLPLGILTLRNNLRYLDLGGNYFYGKIPASYGELQGLQYLSLA GNDLHGRIPGELGNLTNLREIYLGYYNGFEGGIPLQLGNLVNLVHMDISSCELDGQIPWQLGNLKQLDTLYLHANMLSGFIPKELGNLTNLVNLDLSINA LTGEIPVEFINLQQLRLFNLFMNKLHGSIPDYIAELPNLDTLGLWMNNFTGVIPRKLGQNEKLQSLDLSSNKLTGTIPPDLCSSNQLRILILFKNFLFGP IPDGLGTCYSLTRVRLGQNYLNGSIPNGLIYLPLLNLAEFQNNYLSGVLSENGYSSSKPDKLGQLDLSNNLLSGPLPSSLSNFSSLQMLLLGRNNFSGSI PSTIGELHQVLKLELSSNSLSGPIPPEIGNCSHLAFLDFSQNNLSGPIPPEISNIHILNYLNLSRNHLNQTIPKSIGTMKSLTIADFSFNQFSGKLPDSG QFSVFNASSFAGNPKLCSNILNNPCNLTTNTDEPTKSPDNFKLIFALGLLICSLVFATAAIVKARSFKRSGGSEKPWKMTSFQKSTEFAVADILECVKDG NVIGRGGAGIVYHGKMPSGCEVAVKKLLGFGPPNGHDHGFRAEIQTLGNIRHRNIVKLVAFCSNGETNLLVYEYMKNGSLGEALHGRKGAAGGTGFQLGW GLRYKIAVEAAKGMCYLHHDCSPLIVHRDVKSNNILLDSGFEAHVADFGLAKFLVDECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRR PVGDFGEGVDIVQWTRKVTSQRREEVMSIIDRRLTMVPKEEAMHLFFVAMLCSQENSIERPTMREVVQMLSEYPHHLTASQPLPSSSVIAPQVLKSAGGE RNNSILKQQNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	1.0	0.9395
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	3.7	0.8764
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	3.7	0.9140
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	4.0	0.9020
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	5.2	0.9059
AT2G38890			unknown protein		Lus10023488 [exp]	8.2	0.7992
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	8.7	0.8859
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	13.0	0.8770
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	13.1	0.8561
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	15.0	0.8417

Compare expression of checked genes

Lus10037358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.