Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77750 139 / 2e-42 Ribosomal protein S13/S18 family (.1) AT5G14320 120 / 8e-35 EMB3137 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006182 [exp] 223 / 2e-74 AT5G14320 132 / 1e-38 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10035785 [exp] 189 / 7e-63 AT1G77750 102 / 7e-29 Ribosomal protein S13/S18 family (.1) Lus10025642 [exp] 125 / 9e-37 AT5G14320 222 / 4e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10018192 [exp] 124 / 1e-36 AT5G14320 222 / 3e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088400 [exp] 180 / 7e-58 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1) Potri.002G088300 [exp] 125 / 9e-37 AT5G14320 229 / 5e-78 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.005G172600 [exp] 125 / 1e-36 AT5G14320 227 / 5e-77 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [flax] [poplar] H2TH PF00416 [flax] [poplar] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Lus10037359 pacid=23152323 polypeptide=Lus10037359 locus=Lus10037359.g ID=Lus10037359.BGIv1.0 annot-version=v1.0 ATGCTTGGACTCGGAAGATCTCTTCACGATGTCAGCCAACGCCTTCTTCAGAATGTAGCGTTCCGCTGTCAACAAGTGCAATGCCTTCGTATCGGGAATG CGGAGATTCCGAATCACAAGAGGCTGGAGACTTCTCTTCAGTATATCCATGGAATTGGGCGCAGCAGGGCTCATCAGATGCTAGTGGACTTGAGTATTCA GAATAAGCTTACCAGGGACTTGACTGGTGTAGAACTTAATTCTCTTAAGGAGGAGGTGTCTAGGTACTTGACTGGAGGAGATCTAGTAAGCTCTCATCTT TGCTCCCTTACTAAGACCTGTCTTTCTCTTACACTAGTTTGTTCTCTTTGTGGTGCCCAGAAACGATGTGTTAGTGCTGATGTACAAAAATTGATTGATA GTGGATGCTACAGAGGTATCAGGCATATCGATATGTTGCCTTGCAGGGGACAACGGACCAAGACCAACGCGAGGACTAGGAAAGGTGAGCATGGGGGTAT ATTGCCGTTGTGGTAG
AA sequence Show only first row Show all	>Lus10037359 pacid=23152323 polypeptide=Lus10037359 locus=Lus10037359.g ID=Lus10037359.BGIv1.0 annot-version=v1.0 MLGLGRSLHDVSQRLLQNVAFRCQQVQCLRIGNAEIPNHKRLETSLQYIHGIGRSRAHQMLVDLSIQNKLTRDLTGVELNSLKEEVSRYLTGGDLVSSHL CSLTKTCLSLTLVCSLCGAQKRCVSADVQKLIDSGCYRGIRHIDMLPCRGQRTKTNARTRKGEHGGILPLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10037359 [exp]	0	1
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Lus10018227 [exp]	5.7	0.8207
AT1G15420			unknown protein		Lus10007894 [exp]	7.3	0.8235
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	10.4	0.8175
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	10.7	0.8054
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	12.0	0.7816
AT3G52040			unknown protein		Lus10039586 [exp]	13.1	0.8170
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	18.0	0.7988
AT4G08310			unknown protein		Lus10028028 [exp]	19.0	0.7765
AT5G02610			Ribosomal L29 family protein ...		Lus10019180 [exp]	19.5	0.7797
AT4G18100			Ribosomal protein L32e (.1)		Lus10012195 [exp]	21.1	0.7909

Compare expression of checked genes

Lus10037359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.