Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57430 478 / 5e-158 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 470 / 9e-157 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 465 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 469 / 6e-155 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 463 / 8e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 461 / 3e-153 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 462 / 1e-152 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 453 / 9e-151 MEF22 mitochondrial editing factor 22 (.1) AT3G11460 447 / 2e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 447 / 8e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035788 [exp] 916 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029436 [exp] 483 / 2e-162 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 484 / 3e-161 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 465 / 1e-154 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 462 / 5e-154 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 461 / 2e-153 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 462 / 7e-153 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 462 / 1e-151 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 454 / 1e-148 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006800 [exp] 687 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G191000 [exp] 497 / 3e-166 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 494 / 5e-166 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 484 / 8e-163 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 478 / 2e-160 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 480 / 1e-159 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 472 / 1e-158 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 473 / 6e-158 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.013G044700 [exp] 474 / 1e-157 AT3G22690 582 / 0.0 unknown protein Potri.004G059400 [exp] 474 / 2e-156 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037362 pacid=23152517 polypeptide=Lus10037362 locus=Lus10037362.g ID=Lus10037362.BGIv1.0 annot-version=v1.0 ATGTTACAGGGAGCAACTTGTAGCATACGACACAAAGCAGCAGCATCTGGTTCTCGAACACTTTCTGATTACACCTTTCTCCTCTGCGCTTGCATCCAAT CCAATTCCCTCACCCTTATCCATCAAAGACTCCTCGCAACCTTCGCACTACCGGAACGTCCTACTACACGTGACAAGTTTGAAAAGGCTCCCAAGGTGTT CGGCAAAATTCCCCAGAGACGCCCGAGAGGAGTGATACAGTGGAATCATTTGATCAGATCGTATGCTTGGAATGGACCCTTCGAGAGATCCCTCGATTTC TACTACCAAATGCTGGATTGTGGAATTATTCCCAATAAATACACATTTCCTTTTGTTCTCAAAGCTTGTTCGGCTCTTCAGGCTGTAGACCAAGGCAGAG GAATTCACGCTCACGCTAAAAGGCTTCAACTTGATTCTGATGTTTACGTTTCGACGGCTTTGGTGGATATGTATTTGAAATGCGGGTGCCTTTGTGAAGC TATGGAGGTGTTTGATGGCATGCCTCGTAGAGATGTTGTTGCCTGGAATTCCATGATTGCTGGGTTCTCATTATGCGGGGGTGGTGATTACGCTGAGGTG ATTCGCTTGCTCCTGAAAATGCAGGAGGATGTGAGTCCTAACTCTTCCACCATCGTGGGTGTCCTTCCGATGGTTGCTCAAGCTAAGATTTTGAGCCATG AGGAGGGGTTACAACAATGTTATATCTTGAAGACGGGTGCTGTTTTCGATATGATGGTATGCAACACTTTACTGTCGATCTATGCAAAATGTGGGGTTAT CGACGATGCAAGTAGTTTTTTCAACGAAATGCTGTTAAAAGATGCGGTTACTTATGCTGCTATAATTTCGGGATACGTTCAGAACGGTTATGCTGAGGAG GCATTACAAATGTTCTATAAGTTGCAATGGTCTGAACTAGATCCAGATATTTCGACAATGATAGGGATCCTCCCTGCGTGTTCCCATTTGGCCGCTCTTC AACATGGTTATTGCAGTCACTCGTACGCTATAGTCCATGGTTTTGCGTCTCGTACCATAGTCTGCAATGCACTCATTGATATGTATGCAAAGTGTGGGAA GATCTATACAGCAAGGAAAGTGTTTGATACAATGGATGATCGGGACTTGATCTCTTGGAACTCGATGATAGATGCCTATGGGATTCACGGGCTCGGCAAG GATGCATTGTCATTGTTTAAAGAGATGCAGGTGGAAGGCACAATGCCAGATGATGTTACATTCATCTGTCTCTTATCAGCTTGCGGCCATTCAGGACTTG TTGATGAAGGGAAAAGATGTTTCAGTTCCATGACCCGAGATTTCGGCATCAAACCGAGAATGGATCACTATATATGTATGACCGATCTTCTCAGTCGAGC TGGACTTTTAGACGAAGTTCGCAAGTTCATACAAGCTATGCCGTTCAAACCCGATGTTCGAATATGGGGCTCCGTGTTGGCTTCCTGCAAGATACACAAG AACATCGAACTTGGAGAACAAGTATCGAAAGAAATCGAGAGGTTAGGACCGGAATCTACAGGGAACTTTGTTCTTCTGTCCAATATGTACAGCAGTATCG GGAGATGGGATGATGCTGCACGAGTCAGGCTTACAGAAAAGGAGATGGGATTCAGGAAAAGTCCCGGATGGAGTTCGGTCGAGGTTGGCGGCAATGTTCA CACATTTGTTGGTGGGGATAGGTCTCATCCACAATCACAAGACATACACAAGAAACTTGATGAACTGCAAGTAGAGATGAAGAAGCTGGGATATAGTGCA GAATCAAGCTTTGTTTTCCAGGATGTTGAAGAGGAAGAGAAGGATAAGATCCTATTGTACCACAGTGAGAAACTAGCTATTGCATTTGGAATTCTCAGCA TGAGCCCCTCAAAGCCCATCTTAGTAACCAAGAATCTGAGAGTATGTGGTGATTGTCACAATGCTATCAAACTAATCTCTCTCATTGCAAAGAGAGACAT AATTGTTAAGAGATGCTAG
AA sequence Show only first row Show all	>Lus10037362 pacid=23152517 polypeptide=Lus10037362 locus=Lus10037362.g ID=Lus10037362.BGIv1.0 annot-version=v1.0 MLQGATCSIRHKAAASGSRTLSDYTFLLCACIQSNSLTLIHQRLLATFALPERPTTRDKFEKAPKVFGKIPQRRPRGVIQWNHLIRSYAWNGPFERSLDF YYQMLDCGIIPNKYTFPFVLKACSALQAVDQGRGIHAHAKRLQLDSDVYVSTALVDMYLKCGCLCEAMEVFDGMPRRDVVAWNSMIAGFSLCGGGDYAEV IRLLLKMQEDVSPNSSTIVGVLPMVAQAKILSHEEGLQQCYILKTGAVFDMMVCNTLLSIYAKCGVIDDASSFFNEMLLKDAVTYAAIISGYVQNGYAEE ALQMFYKLQWSELDPDISTMIGILPACSHLAALQHGYCSHSYAIVHGFASRTIVCNALIDMYAKCGKIYTARKVFDTMDDRDLISWNSMIDAYGIHGLGK DALSLFKEMQVEGTMPDDVTFICLLSACGHSGLVDEGKRCFSSMTRDFGIKPRMDHYICMTDLLSRAGLLDEVRKFIQAMPFKPDVRIWGSVLASCKIHK NIELGEQVSKEIERLGPESTGNFVLLSNMYSSIGRWDDAARVRLTEKEMGFRKSPGWSSVEVGGNVHTFVGGDRSHPQSQDIHKKLDELQVEMKKLGYSA ESSFVFQDVEEEEKDKILLYHSEKLAIAFGILSMSPSKPILVTKNLRVCGDCHNAIKLISLIAKRDIIVKRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10037362 [exp]	0	1
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	6.0	0.7223
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	15.4	0.7276
AT3G19950			RING/U-box superfamily protein...		Lus10018167 [exp]	22.7	0.6790
AT5G10695			unknown protein		Lus10042440 [exp]	24.7	0.7239
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	27.1	0.7315
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	41.5	0.7134
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023160 [exp]	79.8	0.7025
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	110.3	0.6802
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	132.3	0.6673
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	169.6	0.6451

Compare expression of checked genes

Lus10037362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.