Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 830 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G28380 536 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 408 / 2e-135 MAC/Perforin domain-containing protein (.1) AT1G29690 397 / 6e-132 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035789 [exp] 1085 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 677 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 676 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 516 / 1e-177 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 448 / 3e-151 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 446 / 3e-150 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 391 / 1e-129 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 377 / 3e-124 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 355 / 5e-115 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006500 [exp] 943 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 732 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 726 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G047700 [exp] 579 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.011G057100 [exp] 578 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 478 / 5e-163 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 475 / 4e-162 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 450 / 5e-152 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 400 / 4e-133 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.016G135100 [exp] 394 / 1e-130 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10037363 pacid=23152619 polypeptide=Lus10037363 locus=Lus10037363.g ID=Lus10037363.BGIv1.0 annot-version=v1.0 ATGGCACTCAGACTTCCTGCTCCACAGGCAGCTGAGATTGCAATTGGCTCCATAGGGCTTGGATATGACATTGCAGTCGATCTGAGGTTAAAATACCGAA AAGTAGATGTAAATGATTCACGCTTGATTGAGATTGATGAGGACGGTGGTCGAGAGATCGGACTGCCTGGTGGGTTTGTCATCCCAAATGTCCCAAAATC AATTAAATGTGATAAAGGTGAAAGAACGAGGTTTAGATCAGATGTTCTGTCTTTCCAGCAGAAAGATGCAGCTAACACCAAAACCCTTTCTTTTGATGGG GTATTCATTACACTATACTCAGTTGCACTGGAGAAATCTCAGATTGTTCTCTGTGATCATGTTAAGAAGGCAGTCCCGTCATCGTGGGAACCAGCTGCCC TGGCCAAGTTCATCGAAACATTTGGAACACATATTATTGTTGGTGTCAAGATGGGTGGAAAGGATGTAATATACATAAAACAGCAGCACTCTTCAACTCT TCAAACAGCTGATCTGCAGAAAAGATTGAAGGAGATGGCTGATAAAAGATTTTCAGATGTCAATGGCCAGTATAGTTCTTCTTCTTCAGAAGTATACCAA AATAAGAAGTTTGATATAAGAGAGCAGCGATTGAGGTTTGCTGATACAAGTCCTTCCAGTTCTTATTCACACAAGGAGGATTTCACCCGAATTTACAAGA GAAGAGGCGGAAATGATAGTGGATACCTTACACATAGCGAGTGGTTAAACACCGTTCAATTAGAGCCAGACGTGATCTCTATGTCATTCATCCCGATCAC TTCTCTGTTGAATGGAGTCCCAGGGAGTGGATTCTTGAGCCATGCCATAAATCTCTATTTAAGATATAAGCCTCCAATTGAAGAGCTACACCAGTTTCTG GAATTTCAGCTGCCACGGCAGTGGGCGCCAGTGTTCAGTGAGCTTCCTCTTGGCCCGCAACGGAGGCAACATAGCAGCGCATCCTTACAGTTTAGCTTTA TGGGTCCCAAGCTGTTTGTGAACACAATCCTGGTTGACGTCGGTCAGAGGCCGGTTACTGGCCTTAGACTATATCTGGAGGGCAGAAGATGCAACCGTTT AGCCATACATCTGCAGCATCTTTCCTCTCTTCCCAAGATCTTTCAACTCAAAGATGATCCAAATGGTAACTTCCCCCACGATGCCTGTGACCGGAAATAT TACGAGAAGGTGCAGTGGAAGAATTTCTCACTCGTCTGCACAGCTCCTGTAGAGTCAGACGAGGAAATCTCTATAGTAACCGGTGCCCAGTTACAGGTGG AGAACTCCAGGTTTAAGAGTGTTCTTTTCCTAAGGCTTCGATTCTCAACCGTGTTGGGAGCTGCAGTTAGAAAGCATCCCGAGTGGGACGGATCGCCAGG TTTGGCAGCAAAATCCGGATTGATATCCACATTAATAAGCCATCACTTCACTTCAGTAGCACAGAAGCCGCCTCCACGAGCAGCCGATGTGTATATAAAC TCAGCTGTATACCCAGGCGGACCGCCCGTTCCGGTGCAAGCCCCCAGGCTTCTCAAGTTCGTGGACACGACAGAGATGGCAAGAGGTCCACAAGACAATC CTGGTTACTGGGTTGTTTCTGGGGCGAGACTTGTCGTTGAGAAGGGAAGGATCTCGCTCCGCGTCAAGTATTCCCTACTAACCATTTTATCCGATGATGA CGATTCAGAAACAGATCACCTAGGCTGA
AA sequence Show only first row Show all	>Lus10037363 pacid=23152619 polypeptide=Lus10037363 locus=Lus10037363.g ID=Lus10037363.BGIv1.0 annot-version=v1.0 MALRLPAPQAAEIAIGSIGLGYDIAVDLRLKYRKVDVNDSRLIEIDEDGGREIGLPGGFVIPNVPKSIKCDKGERTRFRSDVLSFQQKDAANTKTLSFDG VFITLYSVALEKSQIVLCDHVKKAVPSSWEPAALAKFIETFGTHIIVGVKMGGKDVIYIKQQHSSTLQTADLQKRLKEMADKRFSDVNGQYSSSSSEVYQ NKKFDIREQRLRFADTSPSSSYSHKEDFTRIYKRRGGNDSGYLTHSEWLNTVQLEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFL EFQLPRQWAPVFSELPLGPQRRQHSSASLQFSFMGPKLFVNTILVDVGQRPVTGLRLYLEGRRCNRLAIHLQHLSSLPKIFQLKDDPNGNFPHDACDRKY YEKVQWKNFSLVCTAPVESDEEISIVTGAQLQVENSRFKSVLFLRLRFSTVLGAAVRKHPEWDGSPGLAAKSGLISTLISHHFTSVAQKPPPRAADVYIN SAVYPGGPPVPVQAPRLLKFVDTTEMARGPQDNPGYWVVSGARLVVEKGRISLRVKYSLLTILSDDDDSETDHLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	0	1
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	4.9	0.7529
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	9.6	0.6704
					Lus10034961 [exp]	9.9	0.7466
					Lus10009357 [exp]	11.7	0.7323
					Lus10025700 [exp]	14.7	0.7331
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	18.1	0.7147
					Lus10026969 [exp]	18.5	0.7135
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000444 [exp]	19.2	0.7299
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	21.0	0.6857
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	22.4	0.7167

Compare expression of checked genes

Lus10037363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.