Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09810 346 / 2e-113 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT1G79270 298 / 2e-94 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G17330 276 / 3e-85 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G61020 265 / 9e-82 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G48110 268 / 1e-81 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G55500 264 / 5e-81 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G58190 262 / 1e-80 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G13060 265 / 2e-80 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G13460 265 / 2e-80 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT3G03950 247 / 5e-76 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035790 [exp] 1023 / 0 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037365 [exp] 542 / 0 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 276 / 6e-84 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10002624 [exp] 271 / 3e-83 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10033335 [exp] 273 / 5e-83 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10018343 [exp] 271 / 2e-82 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10034792 [exp] 268 / 1e-81 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10020269 [exp] 270 / 2e-81 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10027582 [exp] 256 / 2e-77 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223800 [exp] 582 / 0 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.003G008400 [exp] 549 / 0 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.010G175500 [exp] 332 / 2e-106 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G080800 [exp] 330 / 1e-105 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.007G002800 [exp] 277 / 1e-84 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 274 / 1e-83 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.019G034300 [exp] 270 / 5e-83 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.008G100200 [exp] 273 / 1e-82 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.018G149800 [exp] 268 / 1e-81 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.001G056100 [exp] 266 / 2e-81 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10037364 pacid=23152327 polypeptide=Lus10037364 locus=Lus10037364.g ID=Lus10037364.BGIv1.0 annot-version=v1.0 ATGGCAACCAGGCAAAAGCTCGAGAAACCTGAATCCATAGCCACAGGATTGAAGGTGGAACCTGTTAATAAATTGGCTGAGAATGACAAGCATTCAAGAA AAGATGCAATGCTGTCCAATACAATCTCTTCCATTCCTTCAAGAGATTCTAAACCTAGTGCTAAACGTGAGTCTGATGTGACTTCTGGCATCAAAGGTGT CCATATGGAATCTTTCGGTCAGCAGGCTCTGTATAATCCACCTACTAGCACTTATGGCTATTATTACCCAGGCTATAATGGGCCGTTTCCTCAGTTGGAT GAGCATGGTTATATTCAAGCAGATGGTTCTCATATGGCTATGCAATCTGACAATGGCCAAATGGTGTATTATGTGCCTGGATACAACCCATACTCTCCCG GGGCAGTTGGCGTTGACGGGCAAACCGCCAATCAGCAGCAGTTTTATCCTCCATCTGAATATATTCAACATCCTGTTTCTTACGGATCAGAATCTGTGCC TTGTTATCAGTGGGACAACACTTATCTCAGTTCAACTCCCAATGGTAATGGTAATGTTGGGACTGACAATCACAGCAGGGGTGGAGCTACTCTTCCAAAG TTTAATGGATTGAACTCTATGAAAACTAATGGTAATATCAGCAGCAAATTCCCCAGGCCTAGTGGTACACAGGCTGTTAGGCCTCTAAATAAGGTACCTC CGTACAGCACAGATTACTCGACAGGTGTGTTAAGCGGATATAATAACGGTGTAGGAAAACTACGTCCCTTCAGTGGTCAGAGTCACTACGCTCTTTCGCA GTACGGATCCCTGAACTACAGAAATAATGCCAGCACATGGAATGTAAATGATAGGAACCGATCACGATACAGAAGACAGAGTCATGGAAGCTTTGAATCC TCCAATGAGTTGGCCTGCGGCCCCAGGGGTGCCAACAAGAGTGTGCCTACAGATCCGGCTGCGAAGAACGAAAACCCATTATCATTGTTCAGCAAGGACC TGTATAACTTGCCGGATTTTGAAACTGTGTATGAGAGTGCCAAGTTTTATGTTATCAAGTCTTATAGTGAAGATGACATCCACAAGAGCATCAAGTACAA TGTCTGGTCAAGTACGCCGAACGGCAATAAAAAGCTTGATGCAGCTTTTCGTGATTCGGAGGAGAAATCAAGCGAGAGTGGCACAAAGTGTCCAGTTTTC CTCTTTTTCTCAGTAAACGGTAGTGGGCAGTTTGTTGGGTTGGCTGAAATGACGGGGCTGGTGGACTTCAACAAAGACATGGACTTTTGGCAAGTTGATA AGTGGAGTGGTTTCTTTCCTTTGAAGTGGCATATAGTTGAGGACATTCCCAACACTCAGTTGAGGCATATTGTACTTGAGAACAATGATAACCGGCCCGT CACTTTTAGCAGGGATACTCAGGAGATTGGACTGAAGCAAGGCCTGGAAATGCTGACAATTTTCAAGGAGTACACAGCAAAAGCATCTTTGTTGGATGAC TTCACCTTCTACGAAGATAGGGAGAAGGCTCTCCATGCCAAGAAAAACAAGCCTGCAACTTTGAAAATGGAGGCCTACGAGAATGACGATTTTGCTAATG AGAGAGAAGTAGGAGGAAAGAAGTACGAAGATGATGGTGGAATGACAAAAAGGCAAAGTGATGCTTCCACACTGATCAATTTGACAAAGAATTTATCTCT GAATGGTCCAGCCCCTGCTGTGTAG
AA sequence Show only first row Show all	>Lus10037364 pacid=23152327 polypeptide=Lus10037364 locus=Lus10037364.g ID=Lus10037364.BGIv1.0 annot-version=v1.0 MATRQKLEKPESIATGLKVEPVNKLAENDKHSRKDAMLSNTISSIPSRDSKPSAKRESDVTSGIKGVHMESFGQQALYNPPTSTYGYYYPGYNGPFPQLD EHGYIQADGSHMAMQSDNGQMVYYVPGYNPYSPGAVGVDGQTANQQQFYPPSEYIQHPVSYGSESVPCYQWDNTYLSSTPNGNGNVGTDNHSRGGATLPK FNGLNSMKTNGNISSKFPRPSGTQAVRPLNKVPPYSTDYSTGVLSGYNNGVGKLRPFSGQSHYALSQYGSLNYRNNASTWNVNDRNRSRYRRQSHGSFES SNELACGPRGANKSVPTDPAAKNENPLSLFSKDLYNLPDFETVYESAKFYVIKSYSEDDIHKSIKYNVWSSTPNGNKKLDAAFRDSEEKSSESGTKCPVF LFFSVNGSGQFVGLAEMTGLVDFNKDMDFWQVDKWSGFFPLKWHIVEDIPNTQLRHIVLENNDNRPVTFSRDTQEIGLKQGLEMLTIFKEYTAKASLLDD FTFYEDREKALHAKKNKPATLKMEAYENDDFANEREVGGKKYEDDGGMTKRQSDASTLINLTKNLSLNGPAPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	0	1
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10026618 [exp]	5.5	0.6837
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	14.5	0.7684
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	25.9	0.6526
AT2G47010			unknown protein		Lus10009978 [exp]	26.1	0.6319
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	31.6	0.6847
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	36.5	0.6718
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	37.9	0.6634
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	42.8	0.6130
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	50.6	0.6272
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	53.8	0.6331

Compare expression of checked genes

Lus10037364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.