Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09810 323 / 4e-105 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT1G79270 270 / 9e-84 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G55500 263 / 8e-81 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G13460 266 / 9e-81 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G48110 261 / 5e-79 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G17330 255 / 1e-78 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G13060 255 / 4e-77 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT5G61020 248 / 6e-76 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT5G58190 243 / 2e-73 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G03950 234 / 3e-71 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035790 [exp] 908 / 0 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037364 [exp] 516 / 8e-179 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10002624 [exp] 257 / 4e-78 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 259 / 1e-77 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10017111 [exp] 256 / 9e-77 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 255 / 1e-76 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10027582 [exp] 253 / 2e-76 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10034792 [exp] 252 / 1e-75 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 252 / 1e-75 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223800 [exp] 560 / 0 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.003G008400 [exp] 558 / 0 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.008G080800 [exp] 306 / 1e-96 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 297 / 4e-93 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.007G002800 [exp] 271 / 1e-82 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 265 / 3e-80 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 255 / 2e-77 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.008G100200 [exp] 256 / 1e-76 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.001G002000 [exp] 254 / 1e-76 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.018G149800 [exp] 253 / 2e-76 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10037365 pacid=23152306 polypeptide=Lus10037365 locus=Lus10037365.g ID=Lus10037365.BGIv1.0 annot-version=v1.0 ATGGTTTTCTTTCAGGGTTCTGGAAAAGATGGAGTACTAACCGATTCCCCTGCCTCCATTCCCGGTGCAGGGATTGTGAATTCTGGGATTAAGGGTGTGA ATGGCCATGACTCCAATGGGAAGCTTGATGTCTACAATCAACCCACCAACGGTTATGGTTATTACTACCCAGGATATGGTGGACCCTACGGTCAGATGGA TGATCAAGGATTTTTCCAGCCTGATGGTTCTATTGCAGGTTTGCAGCCGGACAATGGTTCACTAGTCTACTTCTATCCTGGCTATGATCCATATGCTACC GGGGGAGTTCTGGGAGTTGATGGTCAACAACCATACTACTCGTCTCCCGGATATCCAATGTCATATGGCACAGACGCTATGTCTTGTTATCCCTGGGATT CAACTTACATGGGAAATGTGCCAAATGGGAATGCTGGTTATGGAAATGGTAAATATGGCCCTGGATCTAATGGTGTCACCAAGTCCAATGGCCTGAACTC GACTAAATCAAATGGAAACCTTGACAGCAAGTTTCCGAAGGCTGCAAATATGCAAACAACTAGACAGCTTAACAAGGTCGATCCTTTGGGTTCCCAATTT TCAGCTGGCTATTTCAAAGGGTATCAGCCTTTAGGCAAATTTGCTCCATATAACGGCCCAAAGCAAGCTCCTTTCTCTCCGAATGGCTTTGTTAACTACA GGCAAAATGGAAGAGTATGGAATGGCAATTACAGAAACAAGTCTAGGGACAGAACGAATAGAAATGGTGATTTTGACAATGGTACCGAACTAGCTTGTGG TCCTAGAGCGTCCAACAGAAGTGCCCCTTTGGATCCTTCTGCAAAGAAGGAAGAGCTGGAAGTTCCCGTTTGTGGAGTTGAGTATAACCGCCCAGATTTT GAAATCGAGTATGAAAATGCCAAGTTCTATGTCATCAAATCATACAATGAAGATGACATCCACAAGAGCATCAAGTACAATGTCTGGGCAAGTACTCCCA ATGGAAACAGAAAGCTGGATGAGGCATATCGCTCTGCACAGGAGAAATTAAGCGAGTCTGGTGTCAACAGTCCAATATTTCTCTTCTTCTCGGTAAATGG AAGTGGTCAGTTTGTTGGGATAGCTGAAATGGTTGGACAGGTTGACTTCAACAAGGACATGGACTTTTGGCAGCTGAATAAGTGGAATGGTTTCTTCCCT GTCAAGTGGCATGTTGTAAAAGACATCCCTAACAATCAGTTGAGGCACATCATACTCGAGAATAACGAAAACAAACCTGTGACTTTTAGCCGGGACACCC AGGAGATTGGCATGAAGCAAGGCTTGGAAATGTTGAGCATTTTCAAGAGCTACTCACCGAAATCATCATTATTGGAAGACTTCACCTTTTACGAAACGCG GGAGAAGTCTCTTAGTGCTAAAAAGAACAGCAAGCCCACTACCGTGGAAGCTGAAGCAATTGGGAACGGTGAAACTGCGAAGGATGCCAAAACAGGAGAA GAGAGATCTGAGGAGGATGTGAAGATTGAGAAGGATCTTGTGGATCTAACAAAGAATCTGAGCATAAACGGCGGCTGCCATCAGAAGGAGAATCCTGCAA TTGAGCCAATAGAGAATGGGGTCGCTGCTGTTGTTGCTGTTGCTGTGGCTGCACCATAG
AA sequence Show only first row Show all	>Lus10037365 pacid=23152306 polypeptide=Lus10037365 locus=Lus10037365.g ID=Lus10037365.BGIv1.0 annot-version=v1.0 MVFFQGSGKDGVLTDSPASIPGAGIVNSGIKGVNGHDSNGKLDVYNQPTNGYGYYYPGYGGPYGQMDDQGFFQPDGSIAGLQPDNGSLVYFYPGYDPYAT GGVLGVDGQQPYYSSPGYPMSYGTDAMSCYPWDSTYMGNVPNGNAGYGNGKYGPGSNGVTKSNGLNSTKSNGNLDSKFPKAANMQTTRQLNKVDPLGSQF SAGYFKGYQPLGKFAPYNGPKQAPFSPNGFVNYRQNGRVWNGNYRNKSRDRTNRNGDFDNGTELACGPRASNRSAPLDPSAKKEELEVPVCGVEYNRPDF EIEYENAKFYVIKSYNEDDIHKSIKYNVWASTPNGNRKLDEAYRSAQEKLSESGVNSPIFLFFSVNGSGQFVGIAEMVGQVDFNKDMDFWQLNKWNGFFP VKWHVVKDIPNNQLRHIILENNENKPVTFSRDTQEIGMKQGLEMLSIFKSYSPKSSLLEDFTFYETREKSLSAKKNSKPTTVEAEAIGNGETAKDAKTGE ERSEEDVKIEKDLVDLTKNLSINGGCHQKENPAIEPIENGVAAVVAVAVAAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037365 [exp]	0	1
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	2.0	0.9506
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	3.5	0.9403
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10014964 [exp]	6.0	0.9133
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031979 [exp]	7.3	0.9322
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	8.2	0.9012
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	8.4	0.9186
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	8.9	0.9091
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	9.9	0.9033
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	10.0	0.9310
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	10.1	0.9257

Compare expression of checked genes

Lus10037365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.