Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09800 455 / 6e-161 Pseudouridine synthase family protein (.1) AT3G06950 94 / 1e-21 Pseudouridine synthase family protein (.1) AT5G35400 49 / 3e-06 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035791 [exp] 632 / 0 AT1G09800 414 / 7e-145 Pseudouridine synthase family protein (.1) Lus10039480 [exp] 89 / 2e-19 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10023799 [exp] 61 / 5e-10 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 44 / 0.0001 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10037367 [exp] 0 / 1 AT1G47840 97 / 9e-29 hexokinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008500 [exp] 483 / 4e-172 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1) Potri.008G206200 [exp] 92 / 8e-21 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.002G061650 [exp] 67 / 3e-12 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1) Potri.018G147400 [exp] 49 / 5e-06 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10037366 pacid=23152403 polypeptide=Lus10037366 locus=Lus10037366.g ID=Lus10037366.BGIv1.0 annot-version=v1.0 ATGCCGGATAACTCTACCAAACACTGCTTGCTCCTCTCTGAATCTGCTGACAGTGAAAGGCCTCCGAAGCTTCCAAAAACTCAGCAGAGTCCTCCTGACG TTGGAGACGAAGCAGAAGAAGAAGAAGAGGAACACCAAGATAGTATGTGTCCGAACCCTCGGCTTCAACGCTATCTAGTTGCTATTGAGTATATAGGCAC TCGATTCTCTGGTTCTCAGAAGCAGGCCGCCGGCAGGACAGTTGTTAGTGTTCTTGAGGATGCTTTCCACAAATTCATTGGTCAAGCAGTGCCAATCACA TTGTCCAGCCGAACGGATGCAGGTGTGCATGCCTTATCAAATGTTTGCCATGTCGATGTTGAACGAATTAGCAAAAGGAAACCTGGTGAAGTTTTGCCAC CACATGAACCAGAAGTGGTTCGGAGAGCAGTGAACCATTTTTTACAGAAGCATGAGGGTGATATCATGGTCACAGATGTTAGATGTGTTCCACCAGATTT CCATGCAAGATTCAAGGCACAAGGGCGCATGTATTTCTATCGTTTGATGACTGGACTGGAGCCGTTGTCTGCATTCGAAAGAGACCGTGCTTGGCATGTA CCTGAGGAGCTAAATATTGTAGCGATGAAGGAAGCATGCAAAGTTCTCACCGGACATCATGATTTCAGCTCCTTTAGAGCATCTGGTTGTCAGGCTAAAT CACCAATCAGAACTCTAGATGAGCTATCAGTTAATGAGGTGGTTCCAACGCCGTACTTCCCTTCAATCATTGAGAGGGAACAAAACAGTGCAGAAGAAGA GGTTCAACACTGCTCTGGCAATAGTGGAATCGATCTGGGATTTGGGATAAGAAAGAAGCATCGTTGCTATGTAATTACAGCCCGTGCACGTTCTTTTCTT TATCACCAGGTCAGACTGCTGGTTGGCGTCCTCAAATGTGTTGGCACAGGGGAACTTACAGTATCAGATGTGACGAGAATACTGGAGGCGAGATCTGTGA CTGCCACAAGTGCCATGGCTCCAGCTTGTGGTCTCTACCTTGGACAGGTGAAGTATGAGTTGCCTGCGGAGACATGA
AA sequence Show only first row Show all	>Lus10037366 pacid=23152403 polypeptide=Lus10037366 locus=Lus10037366.g ID=Lus10037366.BGIv1.0 annot-version=v1.0 MPDNSTKHCLLLSESADSERPPKLPKTQQSPPDVGDEAEEEEEEHQDSMCPNPRLQRYLVAIEYIGTRFSGSQKQAAGRTVVSVLEDAFHKFIGQAVPIT LSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPEVVRRAVNHFLQKHEGDIMVTDVRCVPPDFHARFKAQGRMYFYRLMTGLEPLSAFERDRAWHV PEELNIVAMKEACKVLTGHHDFSSFRASGCQAKSPIRTLDELSVNEVVPTPYFPSIIEREQNSAEEEVQHCSGNSGIDLGFGIRKKHRCYVITARARSFL YHQVRLLVGVLKCVGTGELTVSDVTRILEARSVTATSAMAPACGLYLGQVKYELPAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09800			Pseudouridine synthase family ...		Lus10037366 [exp]	0	1
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	10.7	0.9188
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10024576 [exp]	14.1	0.9048
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	16.3	0.9114
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	18.0	0.9029
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	18.3	0.9159
AT5G42150			Glutathione S-transferase fami...		Lus10017275 [exp]	23.1	0.8864
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	23.5	0.9091
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	28.8	0.8930
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10022135 [exp]	29.3	0.8954
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	29.8	0.8982

Compare expression of checked genes

Lus10037366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.