Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47840 98 / 8e-23 HXK3 hexokinase 3 (.1) AT2G19860 70 / 2e-13 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT4G29130 69 / 7e-13 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT4G37840 56 / 8e-09 HKL3 hexokinase-like 3 (.1) AT1G50460 54 / 3e-08 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 42 / 0.0003 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035793 [exp] 90 / 5e-23 AT1G47840 67 / 9e-15 hexokinase 3 (.1) Lus10025815 [exp] 79 / 3e-16 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10038287 [exp] 79 / 3e-16 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 71 / 1e-13 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10035792 [exp] 65 / 2e-13 ND / Lus10012946 [exp] 68 / 1e-12 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10034980 [exp] 67 / 2e-12 AT2G19860 334 / 6e-113 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10035797 [exp] 64 / 2e-11 AT1G58025 162 / 1e-45 DNA-binding bromodomain-containing protein (.1.2.3) Lus10037368 [exp] 59 / 9e-10 AT1G58025 246 / 2e-74 DNA-binding bromodomain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238600 [exp] 140 / 3e-38 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 75 / 4e-15 AT4G37840 520 / 0.0 hexokinase-like 3 (.1) Potri.001G190400 [exp] 71 / 9e-14 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 70 / 3e-13 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 56 / 2e-08 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 46 / 2e-05 AT1G50460 576 / 0.0 hexokinase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10037367 pacid=23152269 polypeptide=Lus10037367 locus=Lus10037367.g ID=Lus10037367.BGIv1.0 annot-version=v1.0 ATGGATGAAAGTCTCATCATGAAATGGAAGAGGATGAGGCGGAAGAGGAAGAGAAACAGGAGAAATTGGTCGAAGAATGCTGCTGAAGATGGCAGAAGAC GGGGGGGTCTGTTTGGCAGAGCTGTCCCAGACAAACTATCCACCACTTTCAGTTTCCGAACTCCGGATCTTTGTGCAATGCACCAGGACATTTCTGATGA CCTTCAAACTGTTGGCGCTACACACTACATCGTTGCTGGGGCGGAGTCCAACTTGAGCTCGAGGAAAGTGGCGTTGGAGGTCTGCGATGCGATTGTAAAA CGAGGAGGAAGGCTGGCAGGAACAGGAATCGTGAGGATCCTGCAGAAGATGGAGGAGGACTCAAAAGGGTCTAATCTACGGGAAGAGGACAGTAGTGGGC CTGGACGGTGGCCTTTATGGGCATTACCCTCAGTACAGAGCCAACTTGCAAGAAGCTGTGGTAGAGCTCCTTTGTTGGCTGATACGTCAGGAGAGCAACT GAGTGGAGAAGTCGATCCTCACGTTGTGAAATTCCCTGGAGCATCTGATGCCGAGAAGGAAAGCGTAGTTGCAGTGCAACGTACGAGGGAAGTATGGCGG GCAACTCATACTTCACCTGTCCAAGGTAGAGACCACAAGCTGGAGCCATGGCACTTGTGGCAGTCACAGATCTCGCCTCCAGTATTCTCGTCACTGTTAA TCATCAGTTTCGCACAATTGAGTACAGCAAACACACACAAATACGATACACTTGTACATGCACGATCAGATCAGCGACAGAAGATCATACCATCTGATAC TGTAAGTTCCCCTGTGCCAACACATTTGAGGACGCCAACCAGCAGTCTGACCTGA
AA sequence Show only first row Show all	>Lus10037367 pacid=23152269 polypeptide=Lus10037367 locus=Lus10037367.g ID=Lus10037367.BGIv1.0 annot-version=v1.0 MDESLIMKWKRMRRKRKRNRRNWSKNAAEDGRRRGGLFGRAVPDKLSTTFSFRTPDLCAMHQDISDDLQTVGATHYIVAGAESNLSSRKVALEVCDAIVK RGGRLAGTGIVRILQKMEEDSKGSNLREEDSSGPGRWPLWALPSVQSQLARSCGRAPLLADTSGEQLSGEVDPHVVKFPGASDAEKESVVAVQRTREVWR ATHTSPVQGRDHKLEPWHLWQSQISPPVFSSLLIISFAQLSTANTHKYDTLVHARSDQRQKIIPSDTVSSPVPTHLRTPTSSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10037367 [exp]	0	1
AT4G10320			tRNA synthetase class I (I, L,...		Lus10025306 [exp]	1.0	0.8620
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	6.8	0.8345
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	10.4	0.7764
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	11.1	0.8136
AT1G09310			Protein of unknown function, D...		Lus10039866 [exp]	11.7	0.8042
AT5G25570			unknown protein		Lus10012419 [exp]	13.8	0.6803
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	14.2	0.7621
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	14.3	0.7843
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	17.2	0.7585
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	21.8	0.7560

Compare expression of checked genes

Lus10037367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.