Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58025 153 / 5e-40 DNA-binding bromodomain-containing protein (.1.2.3) AT2G34900 49 / 7e-06 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G52280 48 / 8e-06 GTE6 general transcription factor group E6 (.1.2) AT1G17790 46 / 6e-05 DNA-binding bromodomain-containing protein (.1) AT1G73150 45 / 8e-05 GTE3 global transcription factor group E3 (.1) AT5G65630 45 / 0.0001 GTE7 global transcription factor group E7 (.1) AT1G06230 44 / 0.0002 GTE4 global transcription factor group E4 (.1.2.3) AT5G10550 44 / 0.0003 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035797 [exp] 438 / 2e-152 AT1G58025 162 / 1e-45 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035792 [exp] 105 / 2e-27 ND / Lus10036580 [exp] 95 / 4e-20 AT1G58025 147 / 4e-37 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035798 [exp] 78 / 9e-15 AT1G40087 101 / 1e-22 Plant transposase (Ptta/En/Spm family) (.1) Lus10037367 [exp] 60 / 1e-09 AT1G47840 97 / 9e-29 hexokinase 3 (.1) Lus10007096 [exp] 55 / 1e-07 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 54 / 2e-07 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10017661 [exp] 51 / 2e-06 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 51 / 2e-06 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223700 [exp] 254 / 6e-77 AT1G58025 295 / 3e-92 DNA-binding bromodomain-containing protein (.1.2.3) Potri.009G080000 [exp] 57 / 1e-08 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.001G285700 [exp] 56 / 5e-08 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.011G096400 [exp] 51 / 1e-06 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G355300 [exp] 50 / 3e-06 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.013G118900 [exp] 50 / 5e-06 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.008G043000 [exp] 48 / 9e-06 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 48 / 1e-05 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.019G090700 [exp] 47 / 2e-05 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G073800 [exp] 47 / 3e-05 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10037368 pacid=23152363 polypeptide=Lus10037368 locus=Lus10037368.g ID=Lus10037368.BGIv1.0 annot-version=v1.0 ATGAAGAGGAAGAGAAGCAACAAGAAAGAGAAAGCCAAAGCTCCATCTGATGCCAAAGATGAGGCAGTTGTCAGTATAGAGAGCGAGAGCAGAGAAGATA ATTCGAGTGCGGATGAGGGGAATTCTAGTAAGAAGAGCACTAATGATGACAATAATCAAGAATGTGAATCTGGGATGGAGGTCGATACTCCTCCATCCAC AAGGACTGACCATGTGGCAAGCAAAAACTCCGCTACTTCTGCTGCTGATAACAGAGCTTCTGGCAAGTCGTCTGTTAGACATGTTAAGGTGAAGCTCAAG ACTTCCAAGGCCTTGGAGTCACCTAGTGATACTGATAGAAGCAGTCCTCCTTTGGGTTCCGAGAAACAAGGTGCAGGCAGCGATAAGATGGAGGATAGTG GCAGCTCAGTCCCTGATGTGAAAATGAGTGGTTCTGGCAGTGTGGCAAAGAAACATGGGAGCATAAAGATTAAGACTTCGAAGATGGTGGATGGAACCGT TGTGCCCGCAAAGGATAAGGGGTTAGATTTGAAGTCGCATAAGCCTCCTCTTCAGGTTTCTCAATATAATAAACAAGAGTTAGATTCTGCCTTGACAGTC ATTAGGAAGATAATGAAAATGGATGCAGCTGTTCCTTTTAACGTTTTTTTTATCTACTTGGACTACTTTGATATCATAGATACACCAATGGACTTTGGTA CTATATGCAACAATCTGAAAAAGGATATCAAATATGTGGATTCAGAGGATGTCTACAAGGATGTGCAGTACATTTGGAATAACTGTTTCAAGTACAACAA TAAAGGTGCTGAAGGTGTCCAAGAAGCAGAATCATTAAACCAGGGCAAGGCAAAATCTGGTCAACCAAAACAGAAGTCAAAAAAGCGTCATGGAAGACGC CACAAATCTGATTGTTTATGTGCCGTATGTGTTCTCAAGCGTCGTAGAAGGGAGCGTGAGGAGAATGCTCGTCAGACCGCAGGCCAGTCTGCTGATGAAG GAGCCTCCACAGAGATCAAGCAAGAGGGAGGATCACCTGTGGAAAGCCCCGGTGGAGAAGATTCATCATCAAACGTTGCTGACTCACCTGCTCTAGATAC AGATGCAGAGGTGGATGGAACTGCACAAGATATTAAAATGGAGGAGAGCGATAATAAGCAGAACAATTCTCCTTCAGAGAAGTCTCATGATGAATTGGAA GAGGATGAGGCGGAAGAGGAGGAAGAGAAACAGGAGCAAGCTGACGTATTAGAGACCTCACAGTTGGCTGATAGGTCAGGAGAGCAACTGAGTGGAGAAA TCGATCCCCAAGTTACGAAATTCCCTGGAGCATCGGATGCTGAGAAGGAAAGCGTAGCAGTGCAACACGAAGGGAGTATGGCTGTTAAACAGAGAACTCA TAAGGAGTTGGTTGAAAGGCAGGAAAAGGGAAGCATGTTTGATAAGTTTCGGAATGAAGATCCCATAGTTATGAGCCTGTGCACAAAACTGTTCCCAGAC AACAATAAGTCAATATGGAACGGACCACATTCACTATTTGGGCGTCGTGATCCTACTCCTGCTCGGAAGAGTTGTATTCACAGTGCTATTGAGACACTGA TGAAGTAA
AA sequence Show only first row Show all	>Lus10037368 pacid=23152363 polypeptide=Lus10037368 locus=Lus10037368.g ID=Lus10037368.BGIv1.0 annot-version=v1.0 MKRKRSNKKEKAKAPSDAKDEAVVSIESESREDNSSADEGNSSKKSTNDDNNQECESGMEVDTPPSTRTDHVASKNSATSAADNRASGKSSVRHVKVKLK TSKALESPSDTDRSSPPLGSEKQGAGSDKMEDSGSSVPDVKMSGSGSVAKKHGSIKIKTSKMVDGTVVPAKDKGLDLKSHKPPLQVSQYNKQELDSALTV IRKIMKMDAAVPFNVFFIYLDYFDIIDTPMDFGTICNNLKKDIKYVDSEDVYKDVQYIWNNCFKYNNKGAEGVQEAESLNQGKAKSGQPKQKSKKRHGRR HKSDCLCAVCVLKRRRREREENARQTAGQSADEGASTEIKQEGGSPVESPGGEDSSSNVADSPALDTDAEVDGTAQDIKMEESDNKQNNSPSEKSHDELE EDEAEEEEEKQEQADVLETSQLADRSGEQLSGEIDPQVTKFPGASDAEKESVAVQHEGSMAVKQRTHKELVERQEKGSMFDKFRNEDPIVMSLCTKLFPD NNKSIWNGPHSLFGRRDPTPARKSCIHSAIETLMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	5.3	0.8532
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	6.7	0.8516
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	7.5	0.8568
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	10.2	0.8281
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	11.8	0.8113
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	13.4	0.8462
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	14.0	0.8442
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	14.5	0.8264
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	14.5	0.8393
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	17.0	0.8350

Compare expression of checked genes

Lus10037368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.