Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22880 187 / 6e-62 HTB2, H2B HISTONE H2B, histone B2 (.1) AT1G07790 187 / 7e-62 HTB1 Histone superfamily protein (.1) AT3G45980 185 / 3e-61 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT3G46030 185 / 3e-61 HTB11 Histone superfamily protein (.1) AT3G53650 183 / 2e-60 Histone superfamily protein (.1) AT5G59910 182 / 7e-60 HTB4 Histone superfamily protein (.1) AT2G28720 181 / 1e-59 Histone superfamily protein (.1) AT2G37470 179 / 6e-59 Histone superfamily protein (.1) AT5G02570 172 / 3e-56 Histone superfamily protein (.1) AT3G09480 167 / 2e-54 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041347 [exp] 192 / 8e-64 AT3G45980 226 / 3e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 191 / 2e-63 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10017292 [exp] 190 / 3e-63 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10005897 [exp] 189 / 2e-62 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10005893 [exp] 188 / 2e-62 AT3G45980 234 / 8e-81 HISTONE H2B, Histone superfamily protein (.1) Lus10016156 [exp] 188 / 3e-62 AT3G45980 231 / 1e-79 HISTONE H2B, Histone superfamily protein (.1) Lus10040855 [exp] 187 / 1e-61 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10017456 [exp] 186 / 2e-61 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10023753 [exp] 182 / 2e-60 AT2G37470 203 / 7e-69 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029900 [exp] 188 / 1e-62 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.010G230600 [exp] 188 / 2e-62 AT1G07790 205 / 3e-69 Histone superfamily protein (.1) Potri.010G230801 [exp] 188 / 2e-62 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.010G231300 [exp] 186 / 8e-62 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.008G030600 [exp] 186 / 1e-61 AT5G59910 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091200 [exp] 185 / 2e-61 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.009G028001 [exp] 185 / 3e-61 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.010G230701 [exp] 185 / 5e-61 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.017G123700 [exp] 184 / 7e-61 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091400 [exp] 184 / 1e-60 AT2G28720 186 / 1e-61 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10037371 pacid=23152574 polypeptide=Lus10037371 locus=Lus10037371.g ID=Lus10037371.BGIv1.0 annot-version=v1.0 ATGGCGCCCAAGGCAGCAGAGAAGAAGCCGGCAGAGAAGAAGCCAGCAGAGGAGAAGAAAGCCGAGAAGGCTCCGGCGGAGAAGAAGCCCAGAGCCGAGA AGAAACTCCCGAAAGAAGGAGGCGCCGCTGCCGCCGACAAGAAGAAGAAGCGCAACAAGAAGAACGTCGAGACCTACAAGATCTACATCTTCAAGGTCCT GAAGCAAGTCCACCCTGACATCGGCATCTCCAGCAAAGCCATGGGAATCATGAACAGCTTCATCAACGACATATTCGAGAAGCTCGCTGCAGAGTCCTCC AGGCTCGCAAGGTACAACAAGAAGCCAACCATAACTTCCAGGGAAATCCAGACCGCCGTCCGCCTAGTCCTCCCCGGCGAGCTCGCCAAACACGCCGTCT CTGAAGGAACCAAGGCCGTCACCAAGTTCACCAGCTCGTAA
AA sequence Show only first row Show all	>Lus10037371 pacid=23152574 polypeptide=Lus10037371 locus=Lus10037371.g ID=Lus10037371.BGIv1.0 annot-version=v1.0 MAPKAAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEGGAAAADKKKKRNKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAAESS RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10037371 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10040522 [exp]	1.0	0.9865
AT4G27660			unknown protein		Lus10032928 [exp]	1.4	0.9848
AT1G09200			Histone superfamily protein (....		Lus10005270 [exp]	1.7	0.9799
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	4.2	0.9785
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020399 [exp]	5.5	0.9749
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	5.9	0.9780
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	8.8	0.9702
AT1G01160		GIF2	GRF1-interacting factor 2 (.1....		Lus10008847 [exp]	8.8	0.9468
AT5G14920			Gibberellin-regulated family p...		Lus10039443 [exp]	9.2	0.9753
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	9.2	0.9789

Compare expression of checked genes

Lus10037371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.