Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44890 212 / 2e-70 RP19, RPL9 ribosomal protein L9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041346 [exp] 283 / 2e-98 AT3G44890 270 / 5e-93 ribosomal protein L9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217000 [exp] 237 / 4e-80 AT3G44890 195 / 2e-63 ribosomal protein L9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03948 [flax] [poplar] Ribosomal_L9_C Ribosomal protein L9, C-terminal domain PF01281 [flax] [poplar] Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037372 pacid=23152454 polypeptide=Lus10037372 locus=Lus10037372.g ID=Lus10037372.BGIv1.0 annot-version=v1.0 ATGGCATCCTCATCATACACAGCCAGTGCTCTGAGTTGGAACTCTTCCTCTCTGCTTCACAATTTTAGCGCCCAACCTAATCAAGTCTCCAAGTTGCCTG CTAGAAGAGTCGGCATGTCGATCGTTTGCCAGAAAAAAGTTAAGAAGACCAGAAAGATAATATTGAAAGAGGACACGGAACATGTGGGGAAGAAGGGGGA GCTAGTTGATGTGAAAGCTGGCTTCTACAGAAACTTTCTGCTTCCCCTGGGCAAGGCGCAGATTGTCACACCTACTTTGCTCAAGGAAATGCGGATGGAG GAGGAAAGAATTGAAGCAGAAAAACAGCGGGTGAAAGAAGAGGCACAGCAGCTTGCTAGAATTTTTGAAACTGTCGGAGCCTTCAAGGTGAAGCGGAAAG GTGGAAAAGGCAAACTAATATTCGGATCTGTGACTGCTCAAGATCTTGTCGAGATTATCAAGGCACAGCTTCAAAGGGATATAGACAAACGAATGGTATC GATGCCAGAGATCCGGGAAACAGGAGAATATGTTGCTGAACTCAAGCTTCACCCTGAAGTTAGTGCTAGAGTAAGGGTGAATGTCTTCGCCAACTGA
AA sequence Show only first row Show all	>Lus10037372 pacid=23152454 polypeptide=Lus10037372 locus=Lus10037372.g ID=Lus10037372.BGIv1.0 annot-version=v1.0 MASSSYTASALSWNSSSLLHNFSAQPNQVSKLPARRVGMSIVCQKKVKKTRKIILKEDTEHVGKKGELVDVKAGFYRNFLLPLGKAQIVTPTLLKEMRME EERIEAEKQRVKEEAQQLARIFETVGAFKVKRKGGKGKLIFGSVTAQDLVEIIKAQLQRDIDKRMVSMPEIRETGEYVAELKLHPEVSARVRVNVFAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	0	1
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	2.4	0.9718
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	2.4	0.9756
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	4.0	0.9737
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	4.2	0.9679
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	4.5	0.9705
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	4.9	0.9667
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	5.5	0.9677
AT4G21445			unknown protein		Lus10002594 [exp]	6.2	0.9660
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	6.6	0.9443
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	7.7	0.9698

Compare expression of checked genes

Lus10037372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.