Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 501 / 3e-166 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 493 / 5e-163 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G28180 414 / 1e-132 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT5G22910 406 / 5e-130 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT1G08150 405 / 2e-129 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT1G08140 394 / 5e-125 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28170 387 / 1e-122 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT2G13620 385 / 2e-121 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44930 377 / 6e-119 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08135 373 / 2e-117 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041344 [exp] 1235 / 0 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 675 / 0 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 640 / 0 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10021412 [exp] 636 / 0 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016152 [exp] 612 / 0 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021414 [exp] 462 / 6e-154 AT3G44900 274 / 6e-82 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 467 / 3e-153 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 364 / 2e-113 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040963 [exp] 364 / 4e-113 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098300 [exp] 471 / 2e-155 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 463 / 3e-152 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 421 / 4e-137 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.018G098600 [exp] 414 / 3e-133 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 389 / 5e-123 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 358 / 7e-112 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G171200 [exp] 353 / 5e-110 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 348 / 5e-108 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G182900 [exp] 346 / 2e-107 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.016G127800 [exp] 338 / 2e-104 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10037374 pacid=23152280 polypeptide=Lus10037374 locus=Lus10037374.g ID=Lus10037374.BGIv1.0 annot-version=v1.0 ATGTCATACATTCCATCCAACATTGTGTGGGAGAATGAAACAGTCTGCTATGCTCTTCCTTCCAGAATCTGGCCCGTGGGAATCTTCATCGATCAAAATG GAATCTCCCCATTCAAAAGCATTCTAATGGGAACCGTGACTCATTTCAATATCCAGGTCCTCATCATCTTCCTCCTCTGCAACATCCTCCATTTCTTCCT CCGACATCTCCACATCATCTCATTCGCCTCTCAGTGCTTGGTCGGGGTGATCTTAGGACCGACGGTGATGGCGAAACGTGAAGATCCATATTACAATCAC TATGTATTCAGTCCAGCGAGTCAGGACATATTGAACGCGGCGGCTAGAATGGGATACTCGTTATTCATGTTCTCTATCGGAGTGAAAACCGACGTGGGGA TGATGCTTCGATCCGGAAGAAAGACCATGATTCTCGGAATCGCATCGGTTCTCGTCCCATATATCATCAACTTAATCTTCCAATGGGGACGACTATTCAC CGTCCCAGGCCTAAAGGAGAGAATGGAAATCATTGGATTCTCGGCGCTCCAAGCCATGACGACTTTCCCGGTGGTTTCCCATCTCTTAGTCGAGCTAAAG CTCACGAATTCGGAGCTGGGGAGGCTAGCATTATCTTGCTCCCTAGTTTCAGGACTATTGGCAGCTTGTCTCGAACTCAGTTCCATCATCAGCACCGAAG TAAACGGGCTGATCAATTCATCCATAACGGTTGCATGGGCTCTATTTGCAGCATTCGTGTTGCGTCCGATCATGCTCTGGGTGATCAAACAGACTCCTCC GGGGAACAAGTTTCACCCTGCTTGCGTTCCGATCATTCTAGGGGCTGCCTTTTCATACCAGATCTATTTGGATGCCATGAATCAGTCTCAAGCATTGGGC CCTTTCATCTTAGGCCTGTCTGTTCCTGCTGGGCCTCCGTTGGGCTCCATGCTGGTTGATAGTCTTGAGCCCATAACCAACACCATTCTCTTCCCCCTCT TCGTGGTTACATCTGTCATGAGAGGAGACGTCGGAATCATCTTTACGACGGACTTTCCGAACAAAGATTACTACGTTTCATCCATCGCCGGTTCCCTTTT TGTCAAGTTTGTTGTCTGCTTGTTGTTTTCTCTACCGTGGATGCCGCCGACTGATTCTGTTGTTCTTGCTCTCATCATGAGTTCTAAAGGCATTTACGAG CTTGGCGTCTATACTGGTCACAGAGATACCGAAGCAATAAGTGAATCGGTTTTCTCTCTTTGTTTGGGGTACATTGTACTAAATGCCACGCTGATTCCAA TTTTGGTAAAGTACCTTTACGATCCATCAAGGAAATATGCAGGATATCAAGCGAGGAACTTGTTCAGTTTGAAACCCAGCACTGAGATGAAGGTACTCGC ATGCATGCACAAGCCTCATCACGTTGGTTATATGATTAACTTGCTCGATGTTATGTGTCCTATTCATGGAAACCCAGCTGGGGTGTACGCTCTTCATTTG GTGGAGTTGGTGGGTCGTGCTACGCCAATGCTTATCTCTCACCAGAAGCAGAAATCCGTCTTTGACAACTGCTCCCTAGAGGTCATCATCGCGTTTAATC AATTCGAAAGGAGGAAATTGGGACTCGCGTCGGTCTCTACCTTCACCTCCGTTTCGCAACCGAGGTTCATGCAAGATGATATTTGCACGCTAGCTCTTGA CAAATCCACTTCGCTTATCCTTATCCCGTTCCACATAACGTGGGCGCTTGACGGGAGCGTTGAATCAGAAGACAACGCCATAAGAGCGTTAAATTCTAAG GTCTTGGAACGAGCCCCTTGCTCCGTAGGGATCTTTTTCAATCGCGGCAACACTAGAGCTCACGACGATGCAGCCGATTATTCTCCGTATTCGGTATGTA TGCTGTACTTGGGAGGGAGAGACGATCACGAGGCGTTATGTATAGCGACACACATGGCTAGGGACTTGGCTCTCGAGCTCACTATCATCCACTTGGTTCC GGATGAGCACGGTAGCACGAGGTCGGGGAAGAGGTTGTCACATGAAAGATTGTTCGACGATGTCGTTTTGAAAGAAGCTTTGAAAGAAACGGCTGGGTTA CCAAATGTTCACTATATGGACCATGTCGTGGAAGACGGTCCCCAGACGGCGACGGTGATTCGGACCCTTATGGACGATCATGACTTGTTTGTGGTTGGAA GACGAAGTACTGTGGAGTCGTCACCTCAAACTGCGGGATTAGCGGAATGGAGCGAATTTCCGGAACTGGGATTGATCGGAGACCTATTGGCATCAAAGGA CATGGAGACTAAAGCTGCTGTATTGGTCGTGCAACAACAAACACAAATCAAATAG
AA sequence Show only first row Show all	>Lus10037374 pacid=23152280 polypeptide=Lus10037374 locus=Lus10037374.g ID=Lus10037374.BGIv1.0 annot-version=v1.0 MSYIPSNIVWENETVCYALPSRIWPVGIFIDQNGISPFKSILMGTVTHFNIQVLIIFLLCNILHFFLRHLHIISFASQCLVGVILGPTVMAKREDPYYNH YVFSPASQDILNAAARMGYSLFMFSIGVKTDVGMMLRSGRKTMILGIASVLVPYIINLIFQWGRLFTVPGLKERMEIIGFSALQAMTTFPVVSHLLVELK LTNSELGRLALSCSLVSGLLAACLELSSIISTEVNGLINSSITVAWALFAAFVLRPIMLWVIKQTPPGNKFHPACVPIILGAAFSYQIYLDAMNQSQALG PFILGLSVPAGPPLGSMLVDSLEPITNTILFPLFVVTSVMRGDVGIIFTTDFPNKDYYVSSIAGSLFVKFVVCLLFSLPWMPPTDSVVLALIMSSKGIYE LGVYTGHRDTEAISESVFSLCLGYIVLNATLIPILVKYLYDPSRKYAGYQARNLFSLKPSTEMKVLACMHKPHHVGYMINLLDVMCPIHGNPAGVYALHL VELVGRATPMLISHQKQKSVFDNCSLEVIIAFNQFERRKLGLASVSTFTSVSQPRFMQDDICTLALDKSTSLILIPFHITWALDGSVESEDNAIRALNSK VLERAPCSVGIFFNRGNTRAHDDAADYSPYSVCMLYLGGRDDHEALCIATHMARDLALELTIIHLVPDEHGSTRSGKRLSHERLFDDVVLKEALKETAGL PNVHYMDHVVEDGPQTATVIRTLMDDHDLFVVGRRSTVESSPQTAGLAEWSEFPELGLIGDLLASKDMETKAAVLVVQQQTQIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	0	1
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	5.3	0.8090
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	7.2	0.8006
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	7.4	0.7614
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	15.0	0.7698
					Lus10012564 [exp]	15.0	0.7557
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	17.0	0.7365
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	19.2	0.7805
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	23.9	0.7294
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10039063 [exp]	26.2	0.6303
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	28.2	0.7588

Compare expression of checked genes

Lus10037374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.