Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28110 462 / 9e-162 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G22940 449 / 6e-156 F8H FRA8 homolog (.1) AT5G61840 229 / 5e-71 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 221 / 1e-67 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT3G57630 97 / 2e-21 exostosin family protein (.1.2) AT4G16745 90 / 3e-19 Exostosin family protein (.1.2) AT5G11130 89 / 6e-19 Exostosin family protein (.1) AT4G38040 87 / 2e-18 Exostosin family protein (.1) AT3G42180 85 / 1e-17 Exostosin family protein (.1.3) AT5G16890 81 / 2e-16 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041343 [exp] 644 / 0 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10043209 [exp] 230 / 4e-71 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 230 / 4e-71 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 226 / 7e-70 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 226 / 1e-69 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10042357 [exp] 94 / 3e-20 AT3G57630 1187 / 0.0 exostosin family protein (.1.2) Lus10039142 [exp] 92 / 5e-20 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 90 / 4e-19 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 85 / 1e-17 AT4G38040 674 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006500 [exp] 533 / 0 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.012G109200 [exp] 229 / 7e-71 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 229 / 7e-71 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 227 / 4e-70 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 222 / 4e-68 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 192 / 3e-57 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.006G054800 [exp] 96 / 7e-21 AT3G57630 1239 / 0.0 exostosin family protein (.1.2) Potri.014G171100 [exp] 90 / 3e-19 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.018G124832 [exp] 87 / 1e-18 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.T124507 [exp] 87 / 2e-18 AT3G42180 526 / 0.0 Exostosin family protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10037376 pacid=23152583 polypeptide=Lus10037376 locus=Lus10037376.g ID=Lus10037376.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTCAAGCGACTCAAACCCAAAGGTTTCCATCCCAAAATGAGACTGAAGCAGCTGCCTTTGCAACAGCAGCAGCAGCCGGAGAAGAAGAAGA AGAACAACAACAACTACCCTTATTTCAAATTCTACAAATGGATCCTCTGGATTTCCCTCTCCCTCTATTTCCTCACCTCTTTCCTCATTAACCACAAGCC CGTCCTCCCCCTCTCCCAAACCCACTTCTCCGAATCCCATTCCGCCGTCGCTTCCCGTGCTCTCTTCGAATCATCATCCGCCAATCCGTCTAAGAAGAGC AGTCGGAGTCGGAGCAGGAGTACTCTGTTGAAGGATTTGAAGATATTCGTCTACGATTTGCCCCCGGAGTACAACTCCGATTGGCTATCCAACGAGAGAT GCAGCAACCATTTGTTCGCCTCGGAGGTCGCCATTCACAAAGCAATTGCTAACGACCAAGATGTGCGGACATACGACCCTTACGAGGCAGATTTCTTCTT CGTCCCTGTTTACGTCTCCTGCAACTTCAGCAAAATCAATGGCTTCCCGGCGATTGGCCACGCAAGATCCCTCATTTCCTCTGCCATTGGGCTAATTTCG TCTGATTATCCGTTTTGGAATCGCTCTCAGGGCGCCGATCACATCTTCGTCGCCTCCCACGATTTTGGTTCCTGCTTCCACACCCTGGAGGATAGAGCGA TTGAAGATGGAGTCCCAGAGTTTATGAAACGATCGATTGTATTGCAAACATTTGGGGTTAAATATCGGCATCCGTGTCAGGAGGTGGAGAATGTGGTGAT TCCGCCGTACGTGTCGCCGGAAAGCGTACGGAGGACGCTTGAGAAGGCTCCGTTGACTGGTCGGCGGGACATTTGGGCGTTCTTCAGGGGGAAAATGGAG GTTCATCCCAAGAATGTCAGCGGCCGCTACTATAGCAAGAAAGTTAGGACGGTGATTTGGCGAAAGTTCAACGGCGACAGGAAATTCTACCTGCAGAGGC AGAGGTTCTCCGGCTACCAGTCAGAGATCGTCCGGTCAACGTTCTGCCTGTGCCCCTTGGGGTGGGCCCCATGGAGCCCACGGCTAGTGGAATCCGTGGC ATTAGGTTGCGTCCCGGTGATAATAGCCGACGGAATACGGCTGCCGTTCCCGGAGGCGGGTGCTTCGGGTGGGGGGGCTCCCCGCGGGTGGGCGGCGGGG GGGGGGGAGGGAGAGGGGGGGGGGACGCCTGGCTCAGAAGCTGGACCGGTCACGTAG
AA sequence Show only first row Show all	>Lus10037376 pacid=23152583 polypeptide=Lus10037376 locus=Lus10037376.g ID=Lus10037376.BGIv1.0 annot-version=v1.0 MAEFKRLKPKGFHPKMRLKQLPLQQQQQPEKKKKNNNNYPYFKFYKWILWISLSLYFLTSFLINHKPVLPLSQTHFSESHSAVASRALFESSSANPSKKS SRSRSRSTLLKDLKIFVYDLPPEYNSDWLSNERCSNHLFASEVAIHKAIANDQDVRTYDPYEADFFFVPVYVSCNFSKINGFPAIGHARSLISSAIGLIS SDYPFWNRSQGADHIFVASHDFGSCFHTLEDRAIEDGVPEFMKRSIVLQTFGVKYRHPCQEVENVVIPPYVSPESVRRTLEKAPLTGRRDIWAFFRGKME VHPKNVSGRYYSKKVRTVIWRKFNGDRKFYLQRQRFSGYQSEIVRSTFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFPEAGASGGGAPRGWAAG GGEGEGGGTPGSEAGPVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	2.8	0.9767
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	5.5	0.9756
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10033672 [exp]	6.3	0.9719
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	6.6	0.9761
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	7.9	0.9563
AT2G47010			unknown protein		Lus10007453 [exp]	8.1	0.9687
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	10.0	0.9699
AT2G40095			Alpha/beta hydrolase related p...		Lus10030405 [exp]	13.5	0.9067
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	14.1	0.9578
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	15.3	0.9660

Compare expression of checked genes

Lus10037376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.