Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 406 / 8e-144 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 400 / 2e-141 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G10550 207 / 2e-65 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G32170 206 / 1e-64 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT1G14720 199 / 6e-62 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT4G14130 197 / 8e-62 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G18990 198 / 2e-61 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT5G57560 196 / 3e-61 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT2G01850 196 / 1e-60 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT3G23730 194 / 2e-60 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041341 [exp] 548 / 0 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 467 / 2e-167 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 463 / 3e-166 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 378 / 2e-132 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 375 / 2e-131 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 374 / 5e-131 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 373 / 2e-130 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 327 / 7e-112 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 248 / 2e-82 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006600 [exp] 419 / 1e-148 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.006G122900 [exp] 408 / 2e-144 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 401 / 8e-142 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G163850 [exp] 206 / 3e-65 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.003G097300 [exp] 202 / 5e-63 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.006G071200 [exp] 200 / 7e-63 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G152400 [exp] 198 / 7e-62 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.001G136100 [exp] 199 / 1e-61 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.019G125000 [exp] 197 / 1e-61 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.006G170100 [exp] 196 / 3e-61 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10037377 pacid=23152616 polypeptide=Lus10037377 locus=Lus10037377.g ID=Lus10037377.BGIv1.0 annot-version=v1.0 ATGGCTGCCCCTGCTCTTCCTCAAACTCTGCTCTTTATTACACTGCAACTTACTATTCTCGCCACTTTAGTTGTTAACAATGCTGCTGAGTACCCACCTT CCCCTGCCTACTTCCCAAGCTCCAGAGCTCCTTCTGTTGAGTTCACCCAAATGTTCAGAAACCGTTGGGGTCCTCACCACCAAAAACTTGACCAACACAC CCTCACTATCTGGCTTGATCAATCCTCAGGAAGTGGGTACCAGTCAATTCAGCCGTATAAATCGGGCTACTTCGGTGCTTCCATCAAACTTCATCCTGGC TACACTGCTGGAGTCATTACATCTTTCTATCTGTCGAACAACGAGGTGCATCCTGGTACCCACGACGAGATCGACATCGAGTTCCTGGGAACCACACCGG GGAAGCCTTACACGTTGCAGACCAATGTGTATGTAAGGGGAAGTGGGGATGGGAACATCATAGGCAGAGAAATGCAGTTTCATCTCTGGTTTGACCCTAC TCAAGATTTCCACCATTATGCAATCCTTTGGGACCCCGATGAGATTATATTTTTTGTGGACGATGTACCAATAAGGAGGTATCCAAGGAAAAGCGATGAG ACATTCCCGCAGAGGCCAATGTGGGTCTATGGCTCAATTTGGGATGCATCCGACTGGGCCACCGAGCACGGCAAGTACAAAGCTGACTATACGTACCAAC CCTTTGTTGGCGAGTACCGCGGATTTAAGTTTGGTGGGTGCACGGCCGACCAGGGAACCGTCTGTCGGCCAACACCAGGGTCTCCAACGGGCTCATCGGG ACTGAGCGAACAGCAAGAAGGTGCCATGGTTTGGGTGCAGAGGAACAGCATGGTGTATGACTACTGTTCAGATCCAGAGAGGGACCACACTCAGACGCCA GAGTGCTAG
AA sequence Show only first row Show all	>Lus10037377 pacid=23152616 polypeptide=Lus10037377 locus=Lus10037377.g ID=Lus10037377.BGIv1.0 annot-version=v1.0 MAAPALPQTLLFITLQLTILATLVVNNAAEYPPSPAYFPSSRAPSVEFTQMFRNRWGPHHQKLDQHTLTIWLDQSSGSGYQSIQPYKSGYFGASIKLHPG YTAGVITSFYLSNNEVHPGTHDEIDIEFLGTTPGKPYTLQTNVYVRGSGDGNIIGREMQFHLWFDPTQDFHHYAILWDPDEIIFFVDDVPIRRYPRKSDE TFPQRPMWVYGSIWDASDWATEHGKYKADYTYQPFVGEYRGFKFGGCTADQGTVCRPTPGSPTGSSGLSEQQEGAMVWVQRNSMVYDYCSDPERDHTQTP EC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Lus10032916 [exp]	1.4	0.9521
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	1.7	0.9582
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	2.0	0.9476
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	3.0	0.9252
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	3.5	0.9499
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	4.2	0.9402
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	4.5	0.9222
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	4.5	0.9463
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	4.9	0.9129
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	5.3	0.9359

Compare expression of checked genes

Lus10037377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.