Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28450 733 / 0 nucleotide binding;protein binding (.1) AT4G02730 73 / 6e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 68 / 6e-12 TAF5 TBP-associated factor 5 (.1) AT5G52820 65 / 3e-11 WD-40 repeat family protein / notchless protein, putative (.1) AT2G16780 65 / 4e-11 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT3G16650 64 / 8e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 63 / 3e-10 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G35050 61 / 5e-10 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G54520 61 / 9e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 60 / 2e-09 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015673 [exp] 332 / 3e-112 AT4G28450 221 / 3e-69 nucleotide binding;protein binding (.1) Lus10037684 [exp] 213 / 3e-60 AT3G14120 1545 / 0.0 unknown protein Lus10027848 [exp] 75 / 2e-14 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 74 / 4e-14 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10006511 [exp] 66 / 2e-11 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 66 / 3e-11 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10014674 [exp] 64 / 9e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 64 / 1e-10 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 63 / 1e-10 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014700 [exp] 781 / 0 AT4G28450 798 / 0.0 nucleotide binding;protein binding (.1) Potri.007G137300 [exp] 781 / 0 AT4G28450 794 / 0.0 nucleotide binding;protein binding (.1) Potri.007G019833 [exp] 67 / 1e-11 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 67 / 1e-11 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 65 / 2e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 65 / 4e-11 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 64 / 1e-10 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G263400 [exp] 63 / 2e-10 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 62 / 3e-10 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.015G069700 [exp] 62 / 7e-10 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04158 [flax] [poplar] Sof1 Sof1-like domain
Representative CDS sequence Show only first row Show all	>Lus10037378 pacid=23152378 polypeptide=Lus10037378 locus=Lus10037378.g ID=Lus10037378.BGIv1.0 annot-version=v1.0 ATGAAGGTGGGAGTAATATCACGCTCTGCTGATGACTTCACTCGGGAGAGAAGCCGAGATATTCAGAGAGTATTTCGCAACTTCGACCCCAACCTTCGTC CTCTAGAGAAGGCAACTGAGTATGTCAGGGCACTTAATGGTGCCAAGCTAGACAAGATTTTTGCAAGACCGTTTGTTGGAGCTATGGATGGTCATGTAGA TGCTGTTTCCTGTATGGCAAAGAACCCAAATTACTTGAAAGGTTTTTTTTCTGGTTCCATGGATGGAGACATTCGCCTTTGGGATATAGCTTCCAGGAGA ACCATTTGTCAGTTTCCTGGTCACCAAGGTGCCGTAAAAGGTTTATCAGTATCCACAGATGGAAGCAGCCTGATATCCTGCGGAACTGATTGCACTGTTA GGCTTTGGAGTGTACCAGTAGCTTCCATCATGGGATCGGATGACGCCTCTAATAAGTCAGTTGAGGCAAATGCAGTATATGTGGGAAAGAACGCTTATTT GGCTGTTGATCATCAGTGGGGTGGTGACCTCTTTGCCACAACTGGTGCTCGAGTTGAAATTTGGAATCACAACAGGTCGCAGCCATTAAACACATTTGAG TGGGGAACAGACACGGTTATCTCTGTCCGATTTAATCCCGGAGATCCAAACATTATGGCCACATCAGCTAGTGACCGCAGCATAGCACTATATGACTTGC GCATGTCGACTCCTTTAAGGAAAGTTATCATGCAGACAAGAACCAATTCGATTGCTTGGAATCCCATGGAGCCAAACAACTTCACTGCTGCAAATGAGGA CTGCAGCTGTTATAGCTATGATCTTAGAAAGCTAGATGAAGCAAAATGTGTCCACAAAGATCATGTTTCTTCCGTCTTGGACATAGACTACTCACCAACT GGCCGGGAATTTGTTACTGGATCTTATGATAGAACAGTTAGAATTTTCCCATATAATGGTGGTCATAGTCGGGAAATCTATCACACAAAGAGAATGCAAA GGGTCTTCTGTGTAAAGTTTAGCTGCGATGCAAGTTACGTTATTTCAGGAAGTGATGACACTAACCTTAGGGTGTGGAAAGCCAAGGCATCAGAGCAGCT TGGAGTTTTGACTCCAAGGGAAAAGAGAAAGCACGAATACCTGGAAGCTCTCATGCATCGTTATGAGCATCTTCCTGAAGTCAAAAGAATACTGAGGCAT AGGCATCTGCCGAAAGCAGTATATAAGGCGAAGGAGCTGCGGCGCACTATAACTGATGCAGAGAAGCAGAAACGGGAAAGGAAGAAAGCTCACAGCGCCG CTGGAAGTATTGTTACCAAATCGGTGCGCACAGGTAGAATCGTCAAAGAAGTTGAGTAG
AA sequence Show only first row Show all	>Lus10037378 pacid=23152378 polypeptide=Lus10037378 locus=Lus10037378.g ID=Lus10037378.BGIv1.0 annot-version=v1.0 MKVGVISRSADDFTRERSRDIQRVFRNFDPNLRPLEKATEYVRALNGAKLDKIFARPFVGAMDGHVDAVSCMAKNPNYLKGFFSGSMDGDIRLWDIASRR TICQFPGHQGAVKGLSVSTDGSSLISCGTDCTVRLWSVPVASIMGSDDASNKSVEANAVYVGKNAYLAVDHQWGGDLFATTGARVEIWNHNRSQPLNTFE WGTDTVISVRFNPGDPNIMATSASDRSIALYDLRMSTPLRKVIMQTRTNSIAWNPMEPNNFTAANEDCSCYSYDLRKLDEAKCVHKDHVSSVLDIDYSPT GREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRVWKAKASEQLGVLTPREKRKHEYLEALMHRYEHLPEVKRILRH RHLPKAVYKAKELRRTITDAEKQKRERKKAHSAAGSIVTKSVRTGRIVKEVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	0	1
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	2.0	0.8285
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	2.0	0.8495
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10041364 [exp]	5.0	0.7455
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	6.2	0.8168
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	6.5	0.8044
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	6.9	0.8130
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	9.5	0.7923
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	9.7	0.8098
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	10.5	0.7854
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	13.0	0.7958

Compare expression of checked genes

Lus10037378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.