Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45010 215 / 2e-68 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 206 / 5e-65 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G10410 196 / 7e-61 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT2G27920 75 / 2e-16 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT1G15000 67 / 2e-13 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G52010 51 / 4e-08 SCPL37 serine carboxypeptidase-like 37 (.1) AT3G52000 49 / 2e-07 SCPL36 serine carboxypeptidase-like 36 (.1) AT2G24000 48 / 4e-07 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G17180 48 / 5e-07 SCPL33 serine carboxypeptidase-like 33 (.1) AT2G22990 44 / 1e-05 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041339 [exp] 318 / 3e-108 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10037958 [exp] 204 / 5e-64 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 204 / 1e-63 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 202 / 5e-63 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10000147 [exp] 128 / 6e-36 AT5G22980 380 / 3e-137 serine carboxypeptidase-like 47 (.1) Lus10036578 [exp] 76 / 1e-16 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10041352 [exp] 74 / 5e-16 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10042334 [exp] 72 / 2e-15 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 69 / 3e-14 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G215400 [exp] 223 / 2e-71 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.010G227700 [exp] 209 / 4e-66 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.008G034800 [exp] 206 / 9e-65 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.009G006701 [exp] 159 / 9e-51 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.009G003100 [exp] 82 / 1e-18 AT2G27920 589 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.006G119300 [exp] 75 / 3e-16 AT2G27920 515 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.005G060100 [exp] 71 / 1e-14 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.012G105500 [exp] 54 / 5e-09 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.008G129800 [exp] 54 / 6e-09 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.006G036000 [exp] 54 / 7e-09 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10037380 pacid=23152357 polypeptide=Lus10037380 locus=Lus10037380.g ID=Lus10037380.BGIv1.0 annot-version=v1.0 ATGGAGACATTTCTGAGCGACGACAAGGTGAAATCAGCGCTCGGGGTGAAAGACATCGACTTTGTTTCTTGCAGCACTCAGGTGTACGACGCGATGATGG GAGACTGGATGCACGACTACGAAGTCGGGATCCCGGCCCTGCTCGAGAGCGGGATCAAGGTTCTCATCTATGCAGGAGAGTACGATTTGATATGCAATTG GGTTGGGAACTCGAATTGGGTGAACGGAATGACATGGTCGGGGCAGAAACAGTTCCAGTCGGCTAAAACTGTACCGTTCATGGCCGGGAATGCTAAATCG GGAGAGCTGAAGAGCTACGGACCTCTGGCATTCCTGAAGGTATACAATGCAGGGCATATGGTGCCGATGGATCAGCCGAAAGCAGCACTGCAAATGCTGG AGAGCTGGATGCAAGGGAAGCTTAGTTTGATGACCACCGCGGCAACTAAGCAAAAGATTTCTCTTGCCCGATAG
AA sequence Show only first row Show all	>Lus10037380 pacid=23152357 polypeptide=Lus10037380 locus=Lus10037380.g ID=Lus10037380.BGIv1.0 annot-version=v1.0 METFLSDDKVKSALGVKDIDFVSCSTQVYDAMMGDWMHDYEVGIPALLESGIKVLIYAGEYDLICNWVGNSNWVNGMTWSGQKQFQSAKTVPFMAGNAKS GELKSYGPLAFLKVYNAGHMVPMDQPKAALQMLESWMQGKLSLMTTAATKQKISLAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10037380 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	2.8	0.8267
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	4.2	0.8036
					Lus10018325 [exp]	6.0	0.7958
AT3G09032			unknown protein		Lus10027777 [exp]	8.8	0.8022
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	10.9	0.7870
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	11.4	0.7919
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	18.0	0.7913
AT5G51040			unknown protein		Lus10043024 [exp]	18.2	0.7749
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	19.2	0.7548
AT2G26520			unknown protein		Lus10020993 [exp]	22.4	0.7432

Compare expression of checked genes

Lus10037380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.