Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10410 451 / 4e-156 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 447 / 1e-154 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 439 / 1e-151 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 188 / 4e-58 alpha/beta-Hydrolases superfamily protein (.1) AT3G25420 173 / 7e-49 SCPL21 serine carboxypeptidase-like 21 (.1) AT4G12910 169 / 2e-47 SCPL20 serine carboxypeptidase-like 20 (.1) AT5G23210 168 / 3e-47 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 164 / 1e-45 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G17180 162 / 7e-45 SCPL33 serine carboxypeptidase-like 33 (.1) AT1G61130 160 / 2e-44 SCPL32 serine carboxypeptidase-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041338 [exp] 732 / 0 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10041339 [exp] 725 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10000147 [exp] 612 / 0 AT5G22980 380 / 3e-137 serine carboxypeptidase-like 47 (.1) Lus10037958 [exp] 432 / 6e-149 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 413 / 7e-141 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 397 / 9e-135 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10025859 [exp] 160 / 3e-44 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10021856 [exp] 155 / 1e-42 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 155 / 3e-42 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G215400 [exp] 464 / 1e-161 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.008G034800 [exp] 412 / 4e-141 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 411 / 1e-140 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G149400 [exp] 173 / 7e-49 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.005G091800 [exp] 169 / 1e-47 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.016G034400 [exp] 162 / 5e-45 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.007G072300 [exp] 160 / 2e-44 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G036000 [exp] 160 / 4e-44 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 158 / 2e-43 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.014G177500 [exp] 158 / 3e-43 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10037381 pacid=23152260 polypeptide=Lus10037381 locus=Lus10037381.g ID=Lus10037381.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCCTCTTCTTCTTCAGCAGCTCAACGCTTCCTCTGTTTATCGCTTGCTCTGTTTCTCTTCTCTTCGTTCTCCTCTGCCCTCAGATACCCAC CGTCTCCTTCTCAATTGGGATTGACTTCAACAACCGAAAAGATCTCACCAAAAGGCCAAGCAGAGAGGCTTATCCGCTCCTTCAATTTGTTCCCCAAACA CGACGCCAACATCGTCCTCAACGACCAGTCTGCCAAAGATGCTCCGGCAATCGTCGAGAGGCAATTCACTCTCAATGTCACTGCCGCCCCCGGCAGCACC CCTGGTCCTTCAATCCAGCAGTTCGGCCATTATGCCGGCTACTATTCTCTCCCCGACACCAAAGGTGCAAAGATGTTCTATTTCTTCTTTGAGTCAAGGC AGAACAAGACCGATGCTCCGGTGGTGATATGGCTGACAGGAGGACCAGGATGCGCAAGTGAATTGGCTTTGTTCTATGAAAACGGTCCTTTCCAGATTAC AGAGGATATGTCCCTTGTTTGGAATGACTATGGTTGGGACCAGGCTTCAAACATATTGTACGTTGACCAGCCCACCGGAACAGGGTTCAGTTACACGACC GACGATAGCGACATCCGACACGACGAAGTCGGAGTTAGTAACGACATGTACAACTTCCTTCAGGAATTCTTCAAAGGTCACCCCAAATATCAAAGCAATG ATTTCTTCATAACTGGAGAATCGTACGCCGGACATTACATTCCGGCTCTGGCTTCCAGGATTTACAAGGGAAACACCAACAAGGAAGGCCTTCACGTTAA CTTGAAGGGATTTGCGATCGGAAACGGGCTCACTGATCCTGCTTTCCAATACAAAGCGTACCCGGATTACGCTCTCTCTGAGAAACTGATTTCCAAGTCT GACCACGACTCCATCGTCAGCCAACTGGTTCCACCTTGCGAATCCGCCATTTCAGCTTGCGCTTCCCAAGGGCAAGACGCTTGCATTGACGCATACTCCA CTTGCAACCAGATCTTCAATTCTATTCTAAACATTGCCGGCTCCATTAATTACTACGACATTCGAAAGCAATGCGAGGGCTCGCTGTGCTACGATTTCTC GAGGATGGAGACATTCCTCAGCGACGACAAGGATAGTTCCTTATTCCATATCCATATTTACAAAAAAGGGTCTCATGTAATTATTTATTATATATTCTTT AGCATATTGCAGCTCATGGTTTCGGGGAAATTAATGAAATAA
AA sequence Show only first row Show all	>Lus10037381 pacid=23152260 polypeptide=Lus10037381 locus=Lus10037381.g ID=Lus10037381.BGIv1.0 annot-version=v1.0 MSSSSSSSAAQRFLCLSLALFLFSSFSSALRYPPSPSQLGLTSTTEKISPKGQAERLIRSFNLFPKHDANIVLNDQSAKDAPAIVERQFTLNVTAAPGST PGPSIQQFGHYAGYYSLPDTKGAKMFYFFFESRQNKTDAPVVIWLTGGPGCASELALFYENGPFQITEDMSLVWNDYGWDQASNILYVDQPTGTGFSYTT DDSDIRHDEVGVSNDMYNFLQEFFKGHPKYQSNDFFITGESYAGHYIPALASRIYKGNTNKEGLHVNLKGFAIGNGLTDPAFQYKAYPDYALSEKLISKS DHDSIVSQLVPPCESAISACASQGQDACIDAYSTCNQIFNSILNIAGSINYYDIRKQCEGSLCYDFSRMETFLSDDKDSSLFHIHIYKKGSHVIIYYIFF SILQLMVSGKLMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	0	1
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	1.0	0.9967
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	1.4	0.9955
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	1.7	0.9949
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	3.9	0.9878
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	4.9	0.9871
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	5.7	0.9818
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	6.0	0.9883
AT5G28950			unknown protein		Lus10025132 [exp]	6.5	0.9696
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	6.9	0.9861
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	7.0	0.9861

Compare expression of checked genes

Lus10037381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.