Plant FIBer expression Database

Lus10037382 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16300 867 / 0 Vps51/Vps67 family (components of vesicular transport) protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041337
[exp]
1395 / 0 AT5G16300 1382 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G177200
[exp]
1028 / 0 AT5G16300 1486 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
Potri.008G079700
[exp]
1006 / 0 AT5G16300 1360 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
PFAM info
Representative CDS sequence
>Lus10037382 pacid=23152621 polypeptide=Lus10037382 locus=Lus10037382.g ID=Lus10037382.BGIv1.0 annot-version=v1.0
ATGGATAGCAAGCAAGTGTTAGCAGGAAGTTTGGAGTGGCTGAAAAGCGTATTCGGATCTGAAATTGAGTTGCCTTGGAGTAGGATCCGGGAGCTAGTTC
TGGAAGATGACTCTGATCTCTGGGATGAGGTATTTGAAGATGCTTTTGTTCAGAGGATGAAAGTCGTCATCGACTCTGGATTTAAGGATCTGGTAAGAGA
TATCAATTTTGAGAGCTCTGTGGCCGCTGTTGGAGGAGATCCTGCTGAGTGTATTGATTTCCAAGCATACTTAAACAGACCCTCCACCGGTGGTGGAGTC
TGGTTTATTGAACCTAATATGAAGAAGCCTGGTGTGACTTTAGGTTATAAAGCATCACTTGAAGGGAACGACTTTTGGAGTTGTCTCAGTGCGTATTTCG
GTCCTGAGGTTGGTCGTATCAGAGATGCAGTTGATAAACGTTGTCAAGTTGTACTTGAGGATGTTTTGAGTTTCTTAGAATCCCCCAATGCAGCTCCTAG
ACTAAAGGAGTTGGTTCCTTTTCTACAAGATAAGTGCTACGCCTGCATGTCTTCTATTCTGACACAAATTAAGACTGAACTTGACCGTCTATATTCTTCC
ATGGGAAAAGCTGATGGGGCGGTTCAGGAAATGCCTCCTGCTGTAGTGGTCGAGAGATCTATATTCGTTGGAAGACTTCTATTTGCGATCCAGAACCACT
CAAAGCACGTCCCACTGATTCTGGGACCTCCTAGGTGCTGGGTGAAAGGTCAAACGGCTCCAGGCTATGAGAAACCAGCATCTGCTTTGAAGCAATACAG
GATTACTGCTGATTCTCTTGATAGTCCTGGGCAGCAGTTGCACACTGGATCTAGAAAACAGAACTCTTCTGGGACTGCTGCTCTAATCAGAAACAGTGAA
ATCGGGAGTCACAAACTTGAAGAGCTGATCAAAATGATCAGAGATCTTTGCATTAAAGCTTATGGCTTGTGGATATCCTGGCTGTCTGATGAGCTTTCTT
CGATTCTTGCCCATAATCTCGTGAACGATGATGGATTATCAACAACAACTGCATTGAAGGGTTGGGATGAGACAGTAGTTAGGCAAGAGACTTCTGATGA
TAGTCCATCGGAAATGAAGATTTCACTCCCTTCCATGCCTTCACTCTATGTTATCTCATTTCTGTTTCGCGCATGTGAAGAGGTTCACAGAATTGGAGGT
CATGTACTTGACAAAGCAATCCTACAAAAGTTTGCCTCAAGGTTATTGGAAAAGGTTTCTGAAATTTACGAGGCCTTCCTTTCTTCAAGGGAGTCTCAAG
GATCACCAGTATCAGAGAAAGGAGTACTACAGATTCTGTTGGATCTCCGATTTGCAGCTGATGTACTTTCGGGAGCTGATTCCAGCAGTGTTCAGGAGTC
ATCTAGAAATCCTAAAGTGAAAGTTCCTTTGAGAATGAGGAAGGATACAAGCCAGACAAAGGCAGTCTTCAGAGAACGAATTAACGTGCTAATTCGATCT
TATTCACAAAGATTGGATCCAATTGATTGGCAAACGTATGAGGCATACCTTTGGGAGAATGCAAGACAATCATATCTGCGACATGCTGTTCTTTTTGGAT
TCTTTGTGCAATTAAATCGCATGTACACAGATACAGTGCACAAGCTGCCGACTAATCCTGAATCAAATATCATGCGATGCTCTACTGTTCCACGCTTCAA
ATACCTTCCAATCAGTGCACCAGCATTGTCTTCCCGAGGGACAGCAAAGTCATCCTTCCGAGCATCCATGGATGATGTATCTTCGAGAAATATGTGGAAA
ACGTATGCCAACAGCGAACATCCTTCAAAGATCGATTTTGATGACAACTCGAGTTTTGGCGTAGCAACACCAATTTTCAAGTCTTTCATGCAGGTCGGGA
GTAGGTTTGGGGAAAGCACCATGAAGTTGGGTTCGATGCTCACAGACGGACAGGTCGGTATATTCAAAGATAGATCCGCGGCTGCCATGTCAACATTCGG
CGACATATTACCTGCACAGGCTGCTGGTCTTCTCTCATCATTTACTGCTACCAGGTCTGAATGA
AA sequence
>Lus10037382 pacid=23152621 polypeptide=Lus10037382 locus=Lus10037382.g ID=Lus10037382.BGIv1.0 annot-version=v1.0
MDSKQVLAGSLEWLKSVFGSEIELPWSRIRELVLEDDSDLWDEVFEDAFVQRMKVVIDSGFKDLVRDINFESSVAAVGGDPAECIDFQAYLNRPSTGGGV
WFIEPNMKKPGVTLGYKASLEGNDFWSCLSAYFGPEVGRIRDAVDKRCQVVLEDVLSFLESPNAAPRLKELVPFLQDKCYACMSSILTQIKTELDRLYSS
MGKADGAVQEMPPAVVVERSIFVGRLLFAIQNHSKHVPLILGPPRCWVKGQTAPGYEKPASALKQYRITADSLDSPGQQLHTGSRKQNSSGTAALIRNSE
IGSHKLEELIKMIRDLCIKAYGLWISWLSDELSSILAHNLVNDDGLSTTTALKGWDETVVRQETSDDSPSEMKISLPSMPSLYVISFLFRACEEVHRIGG
HVLDKAILQKFASRLLEKVSEIYEAFLSSRESQGSPVSEKGVLQILLDLRFAADVLSGADSSSVQESSRNPKVKVPLRMRKDTSQTKAVFRERINVLIRS
YSQRLDPIDWQTYEAYLWENARQSYLRHAVLFGFFVQLNRMYTDTVHKLPTNPESNIMRCSTVPRFKYLPISAPALSSRGTAKSSFRASMDDVSSRNMWK
TYANSEHPSKIDFDDNSSFGVATPIFKSFMQVGSRFGESTMKLGSMLTDGQVGIFKDRSAAAMSTFGDILPAQAAGLLSSFTATRSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16300 Vps51/Vps67 family (components... Lus10037382
[exp]
0 1
AT5G16730 Plant protein of unknown funct... Lus10009550
[exp]
2.2 0.9260
AT1G62020 Coatomer, alpha subunit (.1) Lus10035883
[exp]
2.6 0.9350
AT1G64650 Major facilitator superfamily ... Lus10000337
[exp]
4.6 0.9307
AT1G62020 Coatomer, alpha subunit (.1) Lus10011454
[exp]
5.1 0.9338
AT4G34450 coatomer gamma-2 subunit, puta... Lus10023580
[exp]
5.3 0.9263
AT1G77140 ATVPS45, VPS45 vacuolar protein sorting 45 (.... Lus10018921
[exp]
8.2 0.8972
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Lus10036789
[exp]
9.2 0.9222
AT2G25800 Protein of unknown function (D... Lus10013391
[exp]
10.0 0.8864
AT4G34450 coatomer gamma-2 subunit, puta... Lus10042326
[exp]
10.4 0.9140
AT2G01970 Endomembrane protein 70 protei... Lus10031876
[exp]
10.6 0.9163

Lus10037382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.