Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45040 633 / 0 phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041335 [exp] 1041 / 0 AT3G45040 638 / 0.0 phosphatidate cytidylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007900 [exp] 670 / 0 AT3G45040 644 / 0.0 phosphatidate cytidylyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037383 pacid=23152571 polypeptide=Lus10037383 locus=Lus10037383.g ID=Lus10037383.BGIv1.0 annot-version=v1.0 ATGACAATCGCCACCACCCCGCTGCCGCTGATCACCGGCGAGAGGGCCGTGGTTGTGATGTTCATTGGCTGCTTGTTGTACTCCCTCCCTCACTCGCTTC TCTATCCCGGCATCTTTCTAGCTTTCCTTTCCCTATTTGCAGTCGTCGTCGAGATCCGCTCCGAGAGCTCTGGTTCCCTCTCTCATTTCCAGACCAGACC CGGTGCTTCATCAGGGATATTGCTCGGTGCAGTTACATTGCCTGCACTTATGTTATCAAAGCTAATACAGCTTTCTAGAGCATTGGATTCGCATGAGACT GAACTTGGAGAAGTTGATTATCTACAGACGCAATATTGGGCCACGTCTGTTAGCTGTCTCTGTGTGCTTATCTTCCTCTCCTTAACCGCAAGGTCTGCGC CAAAAAGTTCACACTCCTATCGTAGAGGACTGGCTGCTAATTTTATCTTGGGATGCATTGTCTTGTGTGCAGCATTTTGCAATATCTTCACTACCGGTAA GTTATCCTTTTCCTTCACAGTTGTCAGCATGCAAACAACGTCAAATTTGTTGTGGGTGCTATTTCATGGAGTTGCCACTGTGTATCTGATCCAGCATGTG CTGAAGACATTTCCATCATGCGCCTCTATGGGGGAGACTCTTCTGGTGACTGCGGGACTTGTTCTTTACTTTGGCGATGTATTGGCATGCACCGTTGCAA AGGCTAGTCTTCTTGGATACTGGAGCTCTCCAGCGTTGGCCTTTGTGCAATATGGGATTAGAAGAAATGAGATTAGTATTGTCATTCAGGGACTGCTTCT TGGTCTTCTTCTGTTTCCTGTTACTTTTAAATTTCTGCTTCATGCAATAGACTCCCTTCCAGGAATGTTAAGCTCTGGGACGATGACGCATAATGGGAGA AGATCTCTCATTTTCTTTGTTTCGTTAGGTTTTGTCATGATTATTATCATGCCATTATGGATGCAATTTGTTTGGGATTTTCAGACACACCCGTTCTTAT GGGGGGGCACATTTGTTTTCTCTGAGCCAGCTAAAAGATTGTCTCTGTGTCTCTATTGGGTTGGGTTGATATATGTTTCTGTGCGGCGATTCTACTTCAT ATCAAAGAATAGTAAGACTGAGAGGATTCTTCTCCGGAAGTACTACCATCTGATGGCTGTTTCTATGTTTGTCCCTGCCGCTATCTTCCAGCCAAAGTTT CTTGATCTAGCTTTCGGGGCAGCCTTGGCCATCTTTTTGACATTAGAGATTATTCGAGTCTGGAGAATTTGGCCACTGGGGCAGCTCGTTCACCAGTTTA TGAATGCTTTCACCGACCATCGTGATTCTGATATCCTCATTGTTAGCCACTTTTCACTGTTGCTGGGATGTGCTCTTCCAATTTGGTTATCATCTGGGTA CAATGATCGAGCGCTTGCTCCCTTCGCTGGAATTTTAAGCTTGGGAATTGGAGATACGATGGCATCCATGGTTGGTCACAAGTATGGTGTCTTGAGGTGG AGCAAAACTGGAAAGAAAACAATTGAAGGGACAGCAGCTGGGATAACTTCAGTTTTGGTTGCATGCTCAGTGTTGCTACCAGTTCTAGCATCCGCTGGGT TCATCTTTACTCAGCATTGGCTATCGCTCCTTGTCGCGGTTACGCTGAGTGGATTACTGGAGGCCTACACAGCACAACTTGACAATGCTTTCATACCTCT GGTTTTCTACAGCCTTCTCTGCTTGTGA
AA sequence Show only first row Show all	>Lus10037383 pacid=23152571 polypeptide=Lus10037383 locus=Lus10037383.g ID=Lus10037383.BGIv1.0 annot-version=v1.0 MTIATTPLPLITGERAVVVMFIGCLLYSLPHSLLYPGIFLAFLSLFAVVVEIRSESSGSLSHFQTRPGASSGILLGAVTLPALMLSKLIQLSRALDSHET ELGEVDYLQTQYWATSVSCLCVLIFLSLTARSAPKSSHSYRRGLAANFILGCIVLCAAFCNIFTTGKLSFSFTVVSMQTTSNLLWVLFHGVATVYLIQHV LKTFPSCASMGETLLVTAGLVLYFGDVLACTVAKASLLGYWSSPALAFVQYGIRRNEISIVIQGLLLGLLLFPVTFKFLLHAIDSLPGMLSSGTMTHNGR RSLIFFVSLGFVMIIIMPLWMQFVWDFQTHPFLWGGTFVFSEPAKRLSLCLYWVGLIYVSVRRFYFISKNSKTERILLRKYYHLMAVSMFVPAAIFQPKF LDLAFGAALAIFLTLEIIRVWRIWPLGQLVHQFMNAFTDHRDSDILIVSHFSLLLGCALPIWLSSGYNDRALAPFAGILSLGIGDTMASMVGHKYGVLRW SKTGKKTIEGTAAGITSVLVACSVLLPVLASAGFIFTQHWLSLLVAVTLSGLLEAYTAQLDNAFIPLVFYSLLCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45040			phosphatidate cytidylyltransfe...		Lus10037383 [exp]	0	1
AT4G17250			unknown protein		Lus10004355 [exp]	3.5	0.7145
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	18.4	0.7120
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	18.4	0.6564
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	21.8	0.6914
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	25.2	0.6052
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	25.4	0.6666
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	26.9	0.6854
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	27.4	0.6987
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	31.2	0.6556
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	33.5	0.6763

Compare expression of checked genes

Lus10037383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.