Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28070 951 / 0 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT1G17840 330 / 1e-102 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 301 / 8e-92 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 288 / 5e-87 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 248 / 2e-72 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G71960 127 / 3e-30 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT5G06530 125 / 1e-29 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 124 / 4e-29 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G31770 119 / 8e-28 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT2G01320 118 / 3e-27 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041333 [exp] 1098 / 0 AT2G28070 1007 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10021440 [exp] 966 / 0 AT2G28070 1068 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10016125 [exp] 851 / 0 AT2G28070 1035 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 332 / 2e-103 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 310 / 5e-95 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 294 / 3e-89 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 276 / 4e-82 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 270 / 4e-80 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 256 / 3e-75 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214000 [exp] 1042 / 0 AT2G28070 1069 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.009G008200 [exp] 1022 / 0 AT2G28070 1018 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.001G312300 [exp] 343 / 8e-108 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 342 / 2e-107 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 333 / 1e-103 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 331 / 7e-103 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 330 / 3e-102 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 329 / 4e-102 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 322 / 7e-100 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 315 / 4e-97 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10037384 pacid=23152567 polypeptide=Lus10037384 locus=Lus10037384.g ID=Lus10037384.BGIv1.0 annot-version=v1.0 ATGGAGGAAATACAGTCTCAATCAGACAACTACAGGTCTTCATCATCATCTGCTAGCAGTCCTGCTAGTAGGGTGCCTTCAAGTAACTTCTTCTACATGA GGAAGCCTGGAGCTCTCAGACAGCCCATTTCTTTCGAGGATTCGCCAGAGTGGGAGGATACGGATGGGGACGCTAGTAGGTTGGAAGAAGGAGGAGGGGA CCATGACTCTATAAATATAGCCATGACTCCGGCTTCCCCATCTCTTTCGAAGCTCAATAGTGGCTCGTTGCCATCTCCGCCTATCCCCGAGAGTGTTGCT GCCGTGAGAAAGATTGCAGGGGCTTGTGTTGTGTGGAGAGACTTGACTGTCACAATCAAGGGCAAGAGAAAGTATTCTGATAAAGTTATCAAGAGCTCGA GAGGGTATGCATTGCCTGGGACAATGACTGTAATTATGGGCCCTGCAAGATCTGGCAAATCCACTTTGCTAAGGGCCATTGCAGGAAGATTGCATCAGTC GGCTAAAATGTATGGTGAAGTCTTTATAAATGGCTTGAAATCTCCCATGCCTTACGGCTCATACGGTTTCGTCGAGAGAGAAACTACACTTATCGGGTCC CTTACCGTCCGGGAGTACCTATACTATGCTGCATTGCTTCAACTTCCTGGTTTTTTCTGCCAGAAGAAGAGTGTGGTTGAGGATGCCATCCATGCCATGT CACTGACTGACTACGCAAACAAGTTGATTGGAGGTCACTGTTATATGAAAGGCCTTTCGAGGGGTGAGAGGAGGCGTGTAAGTATTGCTAGAGAGCTAGT GATGAGGCCACATGTCTTGTTCATAGATGAGCCCCTCTATCATCTTGACAGCACGGAAGTGTTTGGTCTCTTTGATCGGATCTGCCTGCTTTCAAATGGA AATACGTTATTCTTCGGAGAAACACTAGCATGCTTGCAGCACTTCTCGAATGCGGGATTTCCATGCCCTATTATGCAAAGCCCATCTGATCACTTCTTGC GTGCAATAAATACTGAATTCGACAGGATCATTGCTATGTGCAAAAACTGGCAGGATGACAATGGAGATTTTTCTTCAGTGAATATGGATACCGCTGTTGC AATACGTACACTGGAAGCAACCTATAAACAGTCAGCAGATTCTGCTGCTGTTGAAACCATGATTTTCAAACTCACGGAAAGGGAAGGTCCGCTGCTTAAA ACCAAGGGAAGAGCTGGGTTTGGGACGAGAATCGCGGTGTTGACTTGGAGATCGTTGCTCATTATGTCAAGAGAATGGAAATACTACTGGCTTCGCCTCA TCCTCTATATGGCTCTTGCACTATGTATTGGCACTGTATTTTCCGGGCTTGGACATTCCCTTTCCTCAGTTGTGACAAGAGTTGCAGCTGTATTTGTTTT TGTGTCATTTACTTCACTTCTAAGCATTGCTGGAGTACCTGCACTTCTTAAAGAAGTCAAGATATATGCGAGTGAAGAATCGAATATGCATTCTGGTGCA CTAGTCTTCTTACTCGGACAGTTCCTCTCCAGCATACCTTTCCTGTTCCTCATCTCCATCTCGTCAAGCCTCGTCTTCTACTTCCTAATTGGTTTAACAG ACGAATTCAGCTTGTTAATGTACTTCGTCCTCAACTTCTTCATGTGTCTTCTTGTGAACGAAGGACTGATGCTCCTTGTCGTTTCGCTCTGGCGACATCT CTTTTGGAGTGTCCTGACATTGGTATCCATCCATGTGGTCATGATGCTCTCTGCGGGCTACTTCAGGATCCGGAATGGCTTGCCTGGACCTTTCTGGACT TATCCTATTTCCTACGTTGCTTTCCATACTTACTGCATTCAGGCAAGTCAATTTTACCCCTTTTCTACTTGGGATGATTTCTTCTATGCTAAACTGTTGA TGAATAATATAAAAGGACTTCTGGAGAACGAGTACCTAGTGACGACGTTCGCGGTAGGTCAAGTGAGGAGCATATCCGGGTATCAAGCTCTTCGAAGTGC ATATGATGTATCGCTGGCCAGCAGTGCCAAGTGGGAGAACTTGTTGGTATTGCTGCTCATGGCAATTGCATGCCGGGTGGTGGTGTTCTTTGTGCTTCAT TTTGGTGTGGGGAAGAATGGGTCTTTACTCGAGTTTTGCAGGTCTAAACGTGATCAGAGCAGCAGCAGCAGTTCCAGATAA
AA sequence Show only first row Show all	>Lus10037384 pacid=23152567 polypeptide=Lus10037384 locus=Lus10037384.g ID=Lus10037384.BGIv1.0 annot-version=v1.0 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYMRKPGALRQPISFEDSPEWEDTDGDASRLEEGGGDHDSINIAMTPASPSLSKLNSGSLPSPPIPESVA AVRKIAGACVVWRDLTVTIKGKRKYSDKVIKSSRGYALPGTMTVIMGPARSGKSTLLRAIAGRLHQSAKMYGEVFINGLKSPMPYGSYGFVERETTLIGS LTVREYLYYAALLQLPGFFCQKKSVVEDAIHAMSLTDYANKLIGGHCYMKGLSRGERRRVSIARELVMRPHVLFIDEPLYHLDSTEVFGLFDRICLLSNG NTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTEFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKQSADSAAVETMIFKLTEREGPLLK TKGRAGFGTRIAVLTWRSLLIMSREWKYYWLRLILYMALALCIGTVFSGLGHSLSSVVTRVAAVFVFVSFTSLLSIAGVPALLKEVKIYASEESNMHSGA LVFLLGQFLSSIPFLFLISISSSLVFYFLIGLTDEFSLLMYFVLNFFMCLLVNEGLMLLVVSLWRHLFWSVLTLVSIHVVMMLSAGYFRIRNGLPGPFWT YPISYVAFHTYCIQASQFYPFSTWDDFFYAKLLMNNIKGLLENEYLVTTFAVGQVRSISGYQALRSAYDVSLASSAKWENLLVLLLMAIACRVVVFFVLH FGVGKNGSLLEFCRSKRDQSSSSSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10037384 [exp]	0	1
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	1.4	0.8468
AT3G07210			unknown protein		Lus10038194 [exp]	2.0	0.8569
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	9.9	0.8328
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	11.6	0.8229
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	12.7	0.8052
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	13.5	0.7854
AT2G40820			unknown protein		Lus10027293 [exp]	13.9	0.8079
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	14.7	0.8027
AT1G23220			Dynein light chain type 1 fami...		Lus10034609 [exp]	17.2	0.7780
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	18.7	0.8254

Compare expression of checked genes

Lus10037384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.