Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56550 700 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 427 / 3e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 420 / 3e-140 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 416 / 4e-136 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 409 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G34160 407 / 9e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 409 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 407 / 2e-134 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 400 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 396 / 6e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041326 [exp] 1158 / 0 AT3G56550 702 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041327 [exp] 626 / 0 AT3G56550 406 / 3e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 407 / 3e-135 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 406 / 1e-134 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 405 / 6e-134 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 405 / 2e-133 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029401 [exp] 399 / 2e-132 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 401 / 5e-132 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 399 / 1e-131 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029500 [exp] 843 / 0 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G199800 [exp] 441 / 1e-148 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 430 / 3e-144 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 429 / 6e-144 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 422 / 5e-140 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G074500 [exp] 419 / 1e-139 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 418 / 4e-139 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G050200 [exp] 418 / 5e-139 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 414 / 1e-137 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 410 / 9e-137 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037387 pacid=23152587 polypeptide=Lus10037387 locus=Lus10037387.g ID=Lus10037387.BGIv1.0 annot-version=v1.0 ATGTTCGATACTGCAAAAGCAAATGCCATTCTCAAGCTGTTGCAAGGATGCAACAACTTCACTAGGTTTCGCAAAATCCACGCCCACGTCATCGTCAACG GCCTCGACTGCCACCCCACCATTTCCACCCAGCTTATTAACTTCTGTGCCATCTCCGTTTCGGGTTCTTTACCTTACGCCCAACACCTGTTCGATAAAAT GCCAGACCCGCCTACTCAGGCTTGGAATTCCATCATCAGAGGCTTTTCCCAGAGCCCTTCGCCTCTGTTAGCTCTCTCTTACTACAACCGCCTACTACAA CTCTCTCATTGGCCTCTATCTCGCTGCCTCGACACTTTCACCTTCACCTTCGCTCTCAAAGCCTGCGAGAGACTCCGTGCTCTACTCAAGTGCAGAGAGA TTCATGGATCCATACTCAGAAGCGGTTACCATACCGATACTGTGGTGTGTACTGGCCTGCTCAGGTGTTACTCTCGAAATGGAGCTGTTGAAGACGCACG TTACGTGTTTGATGAAATGACTGACAGGGATTTGGTAGCGTGGAACGCAATGATTTCGTGCTATTCACAGACTGGACACCACGAACAAGTGATGTCAATG TACGGCATAATGAGGGATGAGAATGTGGCTCTGGATGGATTCTCGCTTGTCGGATTGCTTTCCTCTTGTGCTCATGTGGGTGCTTTGGGATTGGGGATTC AGGTGCACAGGATTGCTTTAGATAAAGGCTTGTTTGGGAATTTGTTCGTGGGAAATGCTCTTATTGATATGTATGCAAAATGTGGTAGCTTGGACGATGC TCTCTCTGTTTTCCGTAAGATGAGAAGGAAAGACGTGTTTACTTGGAACTCGATGATACATGGATTCGGCATCCATGGCCTTGGAAATGATGCTGTATCT TTCTTTCAGCAGATGTTGGTAGGTGGAATCCAGCCGAATTCCATCACCTTTCTGGGGTTGTTATGCGGATGCAGCCACCAAGGGTTGGTAGAGGAAGGTG TGGATTACTTCCACCAAATGAGCTCCAAGTTCAATCTGAAACCTGATATCAAACACTACGGCTGCTTGGTGGATCTGTACGGACGAGCCGGTAAGCTTGA TAAAGCTCTTGAGACCATAGAAACTTCCATCAGTGATCAGTTTCGAGATGATCCGGTCTTGTGGCGAATCCTGCTAGGCTCTAGTAAGATCCATAAGAAC GTGGCCTGTGGAGAGAAAGCAATGAGGAATCTGATCAGACTCAACGCAGTAACTGCAGGGGATTGCGTGCTGCTTTCGACTGTTTACGCCGGAGCAAACT ACGCCCCAGGGGTCGCGAAAATGAGGAAATCGATAAAGACACTCGGCATTAAGACCAGCCCTGGTTGGAGCTGGATTGAGGTCTCGAACCGAGTTCACAA GTTTGTCGTTGACGACAAGTTGCATCCTGAGATCACAGAGGTGTACCAGAAACTGAAGGAGGTAACGAACCGAGCGGCTTCAGTCGGGTATGTGAAAGAC GAGGATGTAATACTGAACCTGCCCAGAGGGTGTTCGGAGACTTTGAGTTCATGTCACAGCGAGAAGCTTGCAATTGCTTATGGGTTGGCGAATTCTCCGG AAGGTATGAGTCTTCGTATCGTTAAGAATTTGAGAGTGTGCAAAGATTGTCACTCATTTACAAAGTTTGTGTCCAAGGCATTCGATAGAAGTATAATCGT GAGGGATCGAGTCCGGTTCCATCACTTCAAGGACGGAGTTTGTTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10037387 pacid=23152587 polypeptide=Lus10037387 locus=Lus10037387.g ID=Lus10037387.BGIv1.0 annot-version=v1.0 MFDTAKANAILKLLQGCNNFTRFRKIHAHVIVNGLDCHPTISTQLINFCAISVSGSLPYAQHLFDKMPDPPTQAWNSIIRGFSQSPSPLLALSYYNRLLQ LSHWPLSRCLDTFTFTFALKACERLRALLKCREIHGSILRSGYHTDTVVCTGLLRCYSRNGAVEDARYVFDEMTDRDLVAWNAMISCYSQTGHHEQVMSM YGIMRDENVALDGFSLVGLLSSCAHVGALGLGIQVHRIALDKGLFGNLFVGNALIDMYAKCGSLDDALSVFRKMRRKDVFTWNSMIHGFGIHGLGNDAVS FFQQMLVGGIQPNSITFLGLLCGCSHQGLVEEGVDYFHQMSSKFNLKPDIKHYGCLVDLYGRAGKLDKALETIETSISDQFRDDPVLWRILLGSSKIHKN VACGEKAMRNLIRLNAVTAGDCVLLSTVYAGANYAPGVAKMRKSIKTLGIKTSPGWSWIEVSNRVHKFVVDDKLHPEITEVYQKLKEVTNRAASVGYVKD EDVILNLPRGCSETLSSCHSEKLAIAYGLANSPEGMSLRIVKNLRVCKDCHSFTKFVSKAFDRSIIVRDRVRFHHFKDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	0	1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	5.5	0.8339
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	6.8	0.7656
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	8.1	0.8141
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	9.4	0.8308
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	10.0	0.8169
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	10.5	0.8266
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	14.0	0.8037
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10010902 [exp]	18.8	0.7474
AT2G20390			unknown protein		Lus10022869 [exp]	19.9	0.7685
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	21.6	0.7754

Compare expression of checked genes

Lus10037387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.