Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04250 239 / 4e-77 Cysteine proteinases superfamily protein (.1.2) AT5G03330 232 / 4e-74 Cysteine proteinases superfamily protein (.1.2) AT3G02070 215 / 3e-69 Cysteine proteinases superfamily protein (.1) AT3G22260 187 / 4e-58 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 86 / 8e-20 Cysteine proteinases superfamily protein (.1) AT2G27350 57 / 7e-09 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G67170 51 / 4e-07 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038708 [exp] 270 / 6e-89 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 263 / 7e-86 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 246 / 1e-79 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 244 / 1e-78 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 243 / 2e-78 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 238 / 2e-76 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 190 / 3e-59 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 186 / 6e-57 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 159 / 2e-47 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094700 [exp] 305 / 7e-103 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 294 / 2e-98 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 290 / 2e-96 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 271 / 3e-89 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.008G036900 [exp] 213 / 7e-69 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.014G140200 [exp] 211 / 2e-67 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.016G019700 [exp] 202 / 3e-64 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G021700 [exp] 199 / 4e-63 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.004G196800 [exp] 59 / 2e-09 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 58 / 3e-09 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10037388 pacid=23152331 polypeptide=Lus10037388 locus=Lus10037388.g ID=Lus10037388.BGIv1.0 annot-version=v1.0 ATGATTACGTACGAGGATGATGATGTTGTACGATGGGGTTTGCAGCTGTTTGAGAGCGATCCCTACTCTAATTATGGGTATTGCCAAACCCCATTGCAGA GAGATTTGAACTACTACGATGGACGCCATTTCAAGGGAGAGTATTACGATCCAGAATGTTGTAATGTGGAAGGGCATGACCTAATTGCTCACGCTCTACA AGAAGAGTTATCGCAGCTTTCGGTTGCTGAGCCACGTGAATCTCCGATCGAAGAGGATCCAGACTCACAAGTGTCCAATTTCCCACCCAATTGGTTTGGC CAACCCACGGTGGAATATTCTGGGCAAGAAGGTGGCCAAGAAGAGGCTGACAATATGGAACCTTCTAGTTCATGTTCAAGTCCCCAGGAAAACCAGTACT GCAGGGAGGATTGGTCTTACTCTGGGGACATGACTGATGTGTATGCTTTTGATGGCGAAGTTGGGAAGTGGTTGAATGAAATGGTCCCAATTCCTCATGT ACCTAGGATTAATGGGGAGATACCTTCAATCGATGACGCAACATTGGATCACCAAAGACTATTAGACAGGCTGCAGGTGTATGATTTAGTAGAGCGTAAA GTGCAAGGAGATGGAAATTGTCAGTTTCGAGCTCTGTCGGATCAGTTTTACCGAACTCTTGAGCACCACGACTTCGTGAGACAACAAGTTGTAAAGCAGC TGAAATCTTGTCCTGAGATGTACGAGGGATATGTTCCGATGGGTTACGAAGAGTATATAGAGAAGATGTCCAAGAACGGTGAATGGGGTGATCATGTGAC TTTACAAGCTGCTGCAGACATGTACGGTGTTAAAATAATTGTTATCACATCCTTCAAGGACACCTGCTATATTGAGATTCTCCCAAATTTCCAAAGATCA GAACGAGGTACGCTGACTATAGTTATTATCTTTTACCTAAAGACAAGAGGAGCACAAGGATAA
AA sequence Show only first row Show all	>Lus10037388 pacid=23152331 polypeptide=Lus10037388 locus=Lus10037388.g ID=Lus10037388.BGIv1.0 annot-version=v1.0 MITYEDDDVVRWGLQLFESDPYSNYGYCQTPLQRDLNYYDGRHFKGEYYDPECCNVEGHDLIAHALQEELSQLSVAEPRESPIEEDPDSQVSNFPPNWFG QPTVEYSGQEGGQEEADNMEPSSSCSSPQENQYCREDWSYSGDMTDVYAFDGEVGKWLNEMVPIPHVPRINGEIPSIDDATLDHQRLLDRLQVYDLVERK VQGDGNCQFRALSDQFYRTLEHHDFVRQQVVKQLKSCPEMYEGYVPMGYEEYIEKMSKNGEWGDHVTLQAAADMYGVKIIVITSFKDTCYIEILPNFQRS ERGTLTIVIIFYLKTRGAQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	0	1
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	4.2	0.8864
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	6.3	0.8572
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	6.8	0.8961
AT4G16807			unknown protein		Lus10010996 [exp]	8.3	0.8833
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Lus10029642 [exp]	10.2	0.7804
AT5G49170			unknown protein		Lus10022872 [exp]	15.6	0.8436
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	15.7	0.8778
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	18.7	0.8764
AT5G38070			RING/FYVE/PHD zinc finger supe...		Lus10002282 [exp]	21.6	0.8313
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	24.7	0.8682

Compare expression of checked genes

Lus10037388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.