Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 195 / 3e-54 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 185 / 3e-50 Protein kinase superfamily protein (.1) AT3G21630 150 / 2e-38 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G01840 128 / 8e-31 Protein kinase superfamily protein (.1) AT2G28250 127 / 1e-30 NCRK Protein kinase superfamily protein (.1.2) AT1G51940 119 / 6e-28 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G09830 111 / 3e-26 Protein kinase superfamily protein (.1.2) AT5G54590 111 / 6e-26 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT3G24550 110 / 3e-25 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G22130 109 / 5e-25 SRF8 STRUBBELIG-receptor family 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041323 [exp] 1076 / 0 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 237 / 2e-69 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 236 / 7e-69 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 228 / 7e-66 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 203 / 1e-56 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016299 [exp] 191 / 1e-52 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022345 [exp] 152 / 7e-39 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1) Lus10016793 [exp] 152 / 8e-39 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10021889 [exp] 146 / 2e-37 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010300 [exp] 572 / 0 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 245 / 9e-73 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 243 / 2e-71 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 239 / 3e-70 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 232 / 1e-67 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 225 / 2e-64 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 199 / 4e-55 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.015G085400 [exp] 184 / 1e-53 AT2G33580 163 / 4e-46 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 184 / 2e-50 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 178 / 3e-48 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10037389 pacid=23152440 polypeptide=Lus10037389 locus=Lus10037389.g ID=Lus10037389.BGIv1.0 annot-version=v1.0 ATGTCAGTCCACTGGTTTTTTGTGTTTCTGCGCACAATCTTCTTCTTCACTTCTTCAGTTTCTGCTCAGCAACACTATGACTCCAAAGATTGTGCTGCAA ATTCCAGCTTCCCTGGTTCAAGATACACCTGCAACAAAACCACCACCAATTCCTGTGAAACATTTGTAATCTTCAGAGCCAACCAACACTTCAACACACT GGAGACTGTGTCCGAGCTCTTGCAGCCACACCAGATGAATGAATCCCTTCAGAATCTGAATCGAATATCATCAAACACGGAGATTCTAGAGCCGGGAAGA GAAATTTTCATTCCGGTCACATGTTCGTGTTCAGGTCAGTACTACTTCCAAACAGATTTGAGCTACACAGCTCCTGAGGACACAAGTGTGGTAGATGTTG CCTGTTCTGTCTTTGAAAGCTTGGTAACTTACCGCACAATCATGCTTGAAAATCAGTTATTAGGTAGTAGTAGTCATGATGATTATGTCTCTGCCGGCAC TAAACTCCATATCCCGCTCAAATGTGCCTGCCCTTCTAAAAGTGATAAAGATTCAGTCTTTAAGTTCCTTGCGACATATCCTGTGTTCGAAGGCGATTCA CTGAGCGAAATCAGTGACAAATTCGGCATTTCATCCGAGGATTTGTTTACAGTCAACGGCCTTGACCAACATTGGCAAACCATCTTTCCCAACACAACCC TCTTGATTCCATTCAAAAGCTTTGTACTGATGAATAAGAGTCACTCTCCTCCTCCTCCTCCACCTCCAACTCCCACGTTTCTTCCCACGAACACGATCGA GAGGCCACCATCATCGAGCAATAAAGATTCAAGCTTTAAGAGCTTGTACATTGCAGGATCAGTTATTGGTTTCTTCCTAGTAGTTGCTGCAATGTTTGCC TTCAGTTTATATGTGAAATCCATGAAGAAGGAAAAAATTCAGAAGCTTTTGTCATTCAACTCTCAACTAACTTGCTCCACACCAAAAAGCTCTGCCACAG GGTTAAGCTCCACAACTCCTCCATGCTTGTCCCCTGATCTTCTAGTTGGAATTCTTTACTCACTGAGGAGCTACACCATAGAGGAATTAAGAAGAGCTAC GAACGATTTCTGTGAGAAGGTGGGATCGGACAATGAATCATACATAGGGGTGCTTGAAGGAGGAGTGGGAACAGTAATGGTGAAGCCACTGAGGTTTGAG GACATAAGGCAAGTGATTGATGTCCATTCCAGAATAAACCACATCAACATTGTGACATTGGTTGGTGTTTGTCATGGAGACAATGAGATTTCCACTTCTT CCTACATACTTCTTGAGTTTCCTAGCAATGGTTGTTTACGAGACTGCATATTATCGAACTCGCTTTGTTGGCATACGCGAACACAGATTGCATTTGACAT AGCCTCGGGCTTACATTACCTCCACGACTGCATTTTCCCATCATATGCTCATATGAGTGTCAATAGTAGGAATGTGTACGTGACGTCGGATTGGAGGGCT AAGCTTACAAATATCAGAATAACCAACTCTGTAAATTTAGGAGGGTCAGGATGGTTGGCTCCGGAGTACAATGGATTGGCTTCTGAGAAGATTGACATTT TCGCGTTCGGAGTGGTGCTTCTAGAGCTGATATCAGGAAGGGAAGATGAGAGTGGCGATGGGAGATTATTCAAGGAATCACTTGGTTTCCTTGGAGGTGG GGAGGGAGGGTGTTTCGAACAGCTTAGGGGATTCATCGATCCATGTCTTGAAGGAGATTACCCTCTCGCTGAGGCGTTGTGTCTAGCTGTACTTGCGAAG ACGTGTGTGGAGGACGATCCTTTGCGCAGGCCGTCCATGGATGATATCCTTAAAGTTCTTGTTAGAATGGTATAA
AA sequence Show only first row Show all	>Lus10037389 pacid=23152440 polypeptide=Lus10037389 locus=Lus10037389.g ID=Lus10037389.BGIv1.0 annot-version=v1.0 MSVHWFFVFLRTIFFFTSSVSAQQHYDSKDCAANSSFPGSRYTCNKTTTNSCETFVIFRANQHFNTLETVSELLQPHQMNESLQNLNRISSNTEILEPGR EIFIPVTCSCSGQYYFQTDLSYTAPEDTSVVDVACSVFESLVTYRTIMLENQLLGSSSHDDYVSAGTKLHIPLKCACPSKSDKDSVFKFLATYPVFEGDS LSEISDKFGISSEDLFTVNGLDQHWQTIFPNTTLLIPFKSFVLMNKSHSPPPPPPPTPTFLPTNTIERPPSSSNKDSSFKSLYIAGSVIGFFLVVAAMFA FSLYVKSMKKEKIQKLLSFNSQLTCSTPKSSATGLSSTTPPCLSPDLLVGILYSLRSYTIEELRRATNDFCEKVGSDNESYIGVLEGGVGTVMVKPLRFE DIRQVIDVHSRINHINIVTLVGVCHGDNEISTSSYILLEFPSNGCLRDCILSNSLCWHTRTQIAFDIASGLHYLHDCIFPSYAHMSVNSRNVYVTSDWRA KLTNIRITNSVNLGGSGWLAPEYNGLASEKIDIFAFGVVLLELISGREDESGDGRLFKESLGFLGGGEGGCFEQLRGFIDPCLEGDYPLAEALCLAVLAK TCVEDDPLRRPSMDDILKVLVRMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33580			Protein kinase superfamily pro...		Lus10037389 [exp]	0	1
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	11.3	0.8378
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	18.3	0.8136
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	19.6	0.8142
AT1G11655			unknown protein		Lus10002065 [exp]	34.6	0.8085
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	35.8	0.7611
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	43.2	0.7950
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	75.9	0.7694
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	76.3	0.7095
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	109.6	0.7384
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026622 [exp]	112.1	0.7458

Compare expression of checked genes

Lus10037389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.