Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60710 156 / 5e-43 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 152 / 1e-41 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 140 / 2e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 111 / 3e-27 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 77 / 1e-15 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 70 / 4e-13 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 67 / 3e-12 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G65683 51 / 5e-07 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G42940 41 / 0.0008 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041321 [exp] 399 / 8e-135 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 208 / 4e-62 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 207 / 3e-61 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 164 / 7e-46 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 162 / 3e-45 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 75 / 1e-14 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 68 / 2e-12 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039634 [exp] 66 / 5e-12 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013497 [exp] 40 / 0.001 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010350 [exp] 208 / 8e-62 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 182 / 2e-52 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 177 / 1e-50 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 109 / 2e-26 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 108 / 2e-26 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 78 / 6e-16 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 72 / 5e-14 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 72 / 1e-13 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.011G150800 [exp] 44 / 3e-05 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 43 / 8e-05 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10037391 pacid=23152295 polypeptide=Lus10037391 locus=Lus10037391.g ID=Lus10037391.BGIv1.0 annot-version=v1.0 ATGGTAGATCTGACGAGCCAGTGGAGGAAGGCGAAACTGTCGCTTGGTTGCTTTCACGTTCCTCGAACTCTCGAGCAGCAAGATGAGAGGACGGACGACC GCCGCCAGCAGCAGCATTCCTCGGGCCCGCCGAGTTCAATCTCTGACGCCGCTGTGGCTGCTTCTTCTTCTTCCCTGGTCTCCGCCACTCCCACACCGCC GTCTTCTGCGTTTCTCTTCAAGTCTGGAGAGAGGTTATGTCCAATTTGCCTCACCACTGTTAAAGCAGGACGAGGAGATGCCATCTTCACTACAGAATGC TCCCACTCTTTCCACTTCCACTGCATTGCATCTAATATCAAGCATGGGAAAGAGATTTGTCCTGTATGCCGAGCAAAATGGAAAGCAATTCCTTCCGAAT CTGCTAAGTTTGATAATTCCAATGGGAGGCCAAGAATCAACAGTGTGTCCTTGACTCAGCTAGAAAGTGATAGCTTGATGAATATGGTGAGACGTATCCC TCCACCACGCCTAGTTACTAACCAGTACGTTTCATCGCATCATCCCATTCAGGAACCAGCCATCTTCGATGATGATGAGGCCTTGGATCGCGACCAACCT TCTATGATTGTTGAAAGAAGTTTATCATCAGTTCATATTTCTGGGGATAACAGTGATGGAAGATCCATGGAGATCAGAACATATCCTGAATATCCAAAAG TTTTGAGACATGTTTCTCATAATGATTTCTCTGTGTTGATTCATTTCAAGGCTCCACCTAAGGTAGAAAGGAGAAACAACAACGAGTCTCTTTCTGAACA GAGTTCTCGTGCTCCAGTTGATCTTATCACAGTGCTTGATAAAGTGGCAGCATGTCTGGCACAAAGCTTGCACTTCTCAAGCGAGCCATGGGATTTGTGA
AA sequence Show only first row Show all	>Lus10037391 pacid=23152295 polypeptide=Lus10037391 locus=Lus10037391.g ID=Lus10037391.BGIv1.0 annot-version=v1.0 MVDLTSQWRKAKLSLGCFHVPRTLEQQDERTDDRRQQQHSSGPPSSISDAAVAASSSSLVSATPTPPSSAFLFKSGERLCPICLTTVKAGRGDAIFTTEC SHSFHFHCIASNIKHGKEICPVCRAKWKAIPSESAKFDNSNGRPRINSVSLTQLESDSLMNMVRRIPPPRLVTNQYVSSHHPIQEPAIFDDDEALDRDQP SMIVERSLSSVHISGDNSDGRSMEIRTYPEYPKVLRHVSHNDFSVLIHFKAPPKVERRNNNESLSEQSSRAPVDLITVLDKVAACLAQSLHFSSEPWDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037391 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10043035 [exp]	1.4	0.8634
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10002160 [exp]	4.0	0.7932
					Lus10027544 [exp]	5.3	0.7566
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	18.2	0.7765
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	46.5	0.6909
AT3G22450			Ribosomal L18p/L5e family prot...		Lus10010558 [exp]	51.8	0.7342
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	149.2	0.6840
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10043361 [exp]	160.8	0.6796
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10042666 [exp]	198.9	0.6489

Compare expression of checked genes

Lus10037391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.