Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60710 137 / 9e-38 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 127 / 2e-34 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 112 / 8e-29 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 105 / 2e-26 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041321 [exp] 268 / 2e-86 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 193 / 4e-58 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 192 / 2e-57 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 132 / 7e-36 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 109 / 7e-28 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010350 [exp] 167 / 1e-48 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 141 / 3e-39 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 133 / 2e-36 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 92 / 8e-22 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 90 / 4e-21 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037392 pacid=23152322 polypeptide=Lus10037392 locus=Lus10037392.g ID=Lus10037392.BGIv1.0 annot-version=v1.0 ATGACAGATGAGACGAGGGAAAACGAAGGATCCGGTTCATTAAACATCCAGAGGCCCGAAGATGTTGGCGCTCAAACAGTGGGAGTTGAAGTGGATAGGC AGAGGAACAGGCTACGTGCAGCAGAGGCTATGGCTGAAGCTAGAGCTGCAGCTGACAAATATGAATTCTCTCTTGCTGTCTCCTTCCTCGATAGCTGCCG TAAGGCATTATCGGAAACTGCATTGGTCCAGGCAGGTGACCAGTTATGCACAGCACTGTGCTCTGAGTTGAGAGAGATGCAGGAAAGGATGGCGAATCAT GCAGTATACGAGAGATGGGGAAGAGCTTATGTTCTCTCTGGTTTGAGCTCACACTTTTTCCAAAGAGCAACTGCTAGGGGTGTTGAGTCCACGGACAGTG GAGCCCTTACGCAATATTACCAGACCCCATCAATGGTGAGGGACATGGTGGACCGTTCTCAGACCTTTACGTTGTTGGGGAATTGGGCATCTGGCAGAAA ACTGAGGCTAGAGCCTTCATTCCCAGCTAGAACAGTGGAGCCGAGGTAA
AA sequence Show only first row Show all	>Lus10037392 pacid=23152322 polypeptide=Lus10037392 locus=Lus10037392.g ID=Lus10037392.BGIv1.0 annot-version=v1.0 MTDETRENEGSGSLNIQRPEDVGAQTVGVEVDRQRNRLRAAEAMAEARAAADKYEFSLAVSFLDSCRKALSETALVQAGDQLCTALCSELREMQERMANH AVYERWGRAYVLSGLSSHFFQRATARGVESTDSGALTQYYQTPSMVRDMVDRSQTFTLLGNWASGRKLRLEPSFPARTVEPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037392 [exp]	0	1
AT1G10640			Pectin lyase-like superfamily ...		Lus10013025 [exp]	5.3	0.6319
AT1G30130			unknown protein		Lus10028119 [exp]	6.9	0.6543
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	20.0	0.6503
AT4G28020			unknown protein		Lus10008905 [exp]	26.2	0.6117
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	30.9	0.6242
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027823 [exp]	44.2	0.5594
					Lus10027544 [exp]	54.3	0.5812
AT3G48300		CYP71A23	"cytochrome P450, family 71, s...		Lus10019157 [exp]	97.0	0.5410
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	109.1	0.5715
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	111.2	0.5726

Compare expression of checked genes

Lus10037392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.