Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28260 984 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G24610 747 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 741 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G53130 706 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT4G30560 705 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G14870 697 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT2G23980 696 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT5G57940 696 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 689 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT1G19780 685 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021461 [exp] 1113 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10041319 [exp] 1027 / 0 AT2G28260 800 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10016097 [exp] 759 / 0 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 756 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 751 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 748 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 715 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 705 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10002363 [exp] 704 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010700 [exp] 1019 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 759 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 720 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 714 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G106100 [exp] 712 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 698 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.013G108200 [exp] 694 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.012G002200 [exp] 692 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 679 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 678 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037394 pacid=23152326 polypeptide=Lus10037394 locus=Lus10037394.g ID=Lus10037394.BGIv1.0 annot-version=v1.0 ATGGCTTGTTCCAATTCAAGATCTGTAAGGTTTAGAGATGACCTTGAGTTGGCAAATGGAGATGGTCTACTCAAGCTTAAACACAATACAATTGCCACGA CTCAAATAGCGGAGTCTGAAGCTGCGAAAAACTCTCACAAACATGCAACTTCTTTGGGGAATGGGAAGTCACTGAAGGCCAAAGTCCTGTCGCGAGTTTT CTCCGAGGACTACGAGAGAGTGAAGAGGAGCATCAACATATTAGATCCTCGGGGGCCGAGAGTCCGGAGTTGGTCCAAGATTTTCTTAGTGGCATGCTTA GTATCTTTGTTTGTTGATCCTTTGTTTTTTTACTTACCAAGAGTCATCAGCGCTGAAGCCTGCATAGGCATTGGGATACCCCTTGAGTTCACCCTTACTT TTCTTCGATCGATAGCGGATGTGTTTTACATGGTCCAGATTTTCATCCGGTTTCGGACAGCTTATGTTGCACCTTCTTCTCTGGTCTTTGGGAGAGGGGA GCTTGTCATAGATCCTGACAAGATTGCCTCAAGGTACCTTAGATGGAACTTCTGGCTTGACCTCTTTGCAGCCCTTCCACTTCCTCAGGTGCTGATTTGG GTGATCATACCATACCTAGGTGGTTCGACCATGTCCAACACGAAAAACGTGCTCCGGTTGATCATAATTTTACAGTTCATCCCGAGACTGTTCCTGATAT TTCCACTCTCTTCCCAAATTGTTAAGGCTACTGGTTTTTTGACAGAAACAGCTTGGGCTGGAGCTGCTTATAACTTGATGCTTTACATGCTGGCAAGCCA TGTTTTAGGAGCTTGCTGGTACCTTTTGTCAATAGAAAGACAAGAAGCATGCTGGATGAGTGCCTGCGACAGGGAGAAACCATCTTGCAAAGTCGATTTC TTTGACTGTCACATGGTCGGTAACTCTCTTAGGGACTCCTGGTTCAATACAAGCAACTCGTCGAAGCTCTGCAAACCGAATAACGGGTTCTACGAGTTTG GCATCTACGGTGATGCAGCAACTTATGGCGTCTTGACAACATCTTTCGTCGACAAGTACTTCTACTGCCTCTGGTGGGGCTTAAAGAACCTCAGCTCCCT CGGGCAGAATCTTTCAACGACCACTTATGTTGGGGAGATAGCCTTTGCCATCATTATTGCAACTCTTGGCCTGGTTCTCTTTGCTTTGCTCATTGGGAAT ATGCAAACATACTTGCAATCAACGACGATCAGGCTAGAAGAGTGGCGGATCAGAAGGACTGATACAGAACAGTGGATGCACCACAGGCAGCTCCCTCCTG ACCTCAGGAATTCCGTCAGGAAATATGACCACTACAAATGGCTCGCCACCCATGGCGTTGATGAAGAAACTCTCCTCAAAGGCCTCCCTTTGGACCTCCG CAGAGACATCAAACGCCACCTCTGCCTCGATCTAGTTCGCCGCGTGCCGCTGTTCGATCAAATGGACGAGAGAATGCTGGACGCAATGTGCGAGAGGCTG AAACCGACACTATCCACGCAAGGGACGGTCTTGGTCCGAGAAGGAGACCTGGTGGACGAAATGCTGTTCGTAATCCGCGGCAACCTCGATTCCCACACCA CAAACGGCGGGAGAACGGGGTTCTTCAACTCCTGCAGGATGGGACCTGGCGAATTCTGCGGGGAGGAGCTGCTGACGTGGGCGCTGGACCCGCGTCCGAT CGCGATGCTCCCTACTTCGACCCGTACGGTAAAGGCCATCTCGGAAGTCGAGGCGTTCGCCCTCCGAGCGGACGATCTACAGTTCGTAGCTTCGCAGTTC AGGAGGCTGCACAGCAAGCAACTGAGGCACACGTTCAGGTTTTATTCCCACCAGTGGAGGAGTTGGTCGGCGTGTTTTCTGCAGGCTGCGTGGCGGAGGT ACAAGAGGAGGAAGGAATCTGCTGAGGTGAGGTGCAGGGAGATGGCCGGGAGAAGGGTGAAGCATTCTTCTTCTGGAAGCGTTATGGCTTCATTGCAGAA GCCGTCGGAACCCGACTTTTCTGCCGAAGTGGATTGA
AA sequence Show only first row Show all	>Lus10037394 pacid=23152326 polypeptide=Lus10037394 locus=Lus10037394.g ID=Lus10037394.BGIv1.0 annot-version=v1.0 MACSNSRSVRFRDDLELANGDGLLKLKHNTIATTQIAESEAAKNSHKHATSLGNGKSLKAKVLSRVFSEDYERVKRSINILDPRGPRVRSWSKIFLVACL VSLFVDPLFFYLPRVISAEACIGIGIPLEFTLTFLRSIADVFYMVQIFIRFRTAYVAPSSLVFGRGELVIDPDKIASRYLRWNFWLDLFAALPLPQVLIW VIIPYLGGSTMSNTKNVLRLIIILQFIPRLFLIFPLSSQIVKATGFLTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWMSACDREKPSCKVDF FDCHMVGNSLRDSWFNTSNSSKLCKPNNGFYEFGIYGDAATYGVLTTSFVDKYFYCLWWGLKNLSSLGQNLSTTTYVGEIAFAIIIATLGLVLFALLIGN MQTYLQSTTIRLEEWRIRRTDTEQWMHHRQLPPDLRNSVRKYDHYKWLATHGVDEETLLKGLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAMCERL KPTLSTQGTVLVREGDLVDEMLFVIRGNLDSHTTNGGRTGFFNSCRMGPGEFCGEELLTWALDPRPIAMLPTSTRTVKAISEVEAFALRADDLQFVASQF RRLHSKQLRHTFRFYSHQWRSWSACFLQAAWRRYKRRKESAEVRCREMAGRRVKHSSSGSVMASLQKPSEPDFSAEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	0	1
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	5.3	0.8149
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	8.5	0.8220
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	10.2	0.8137
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	13.8	0.7768
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	15.3	0.8144
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	16.1	0.8031
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	16.6	0.7465
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	17.1	0.7287
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	20.2	0.7554
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	20.7	0.7884

Compare expression of checked genes

Lus10037394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.